RNA id: TU468104


Basic Information

Item Value
RNA id TU468104
length 565
RNA type TUCP
GC content 0.39
exon number 2
gene id G407413
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4475994 ~ 4550721 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGCTCCCATCCAGACGTCGTCTCTTTCAGGGAAGACCTTGCATTTTCCAACATGACAATGCCAGACCACATACTGCATCAATTACAACATCATGGCTGCGTAGAAGAAGGATCTGGGTACTGAAATGGCCAGCCTGCAGTCCAGATCTTTCACCCATAGAAAACATTTGGCGCATCATAAAGAGGAAGATGCGACAAAGAAGACCTAAGACAGTTGAGCAACTAGAAGCCTGTATTAGACAAGAATGGGACAACATTCCTATTCCTAAACTTGAGCAACTTGTCTCCTCAGTCCCCAGACGTTTGCAGACTGTTATAAAAAGAAGAGGGGATGCCACACAGTGGTAAACATGGCCTTGTCCCAACTTTTTTGAGATGTGTTGATGCCATGAAATTTAAAATCAACTAATTTTTCCCTTAAAATGATACATTTTCTCAGTTTAAACATTTGATATGTCATCTATGTTGTATTCTGAATAAAATATTGAAATTTGAAACTTCCACATCATTGCATTCCTTTTTTATTCACAATTTGTACAGTGTCCCAACTTTTTTGGAATCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468099 lncRNA downstream 5779 4470012 ~ 4470215 (-) True G407409
TU468098 lncRNA downstream 8974 4466818 ~ 4467020 (-) True G407408
TU468097 lncRNA downstream 9460 4464745 ~ 4466534 (-) False CI01000299_04456420_04468754
TU468090 lncRNA downstream 9927 4464745 ~ 4466067 (-) False CI01000299_04456420_04468754
TU468091 lncRNA downstream 9927 4464877 ~ 4466067 (-) True CI01000299_04456420_04468754
TU468120 lncRNA upstream 20410 4571131 ~ 4586048 (-) True G407420
TU468172 lncRNA upstream 85889 4636610 ~ 4637425 (-) True G407467
TU468183 lncRNA upstream 126389 4677110 ~ 4677446 (-) True G407476
TU468184 lncRNA upstream 127297 4678018 ~ 4678228 (-) True G407477
TU468182 lncRNA upstream 153403 4704124 ~ 4704801 (-) True G407475
CI01000299_04456420_04468754.mRNA mRNA downstream 6544 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04398464_04403711.mRNA mRNA downstream 72283 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04370401_04385955.mRNA mRNA downstream 87974 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04242809_04251680.mRNA mRNA downstream 224129 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 236202 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04587880_04594059.mRNA mRNA upstream 37073 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 52670 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04645836_04651938.mRNA mRNA upstream 94918 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04658984_04668843.mRNA mRNA upstream 108174 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04708767_04714088.mRNA mRNA upstream 157782 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
TU467961 other downstream 311670 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2457944 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2595006 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2815994 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3400103 1070607 ~ 1075891 (-) True G404372
TU468235 other upstream 375247 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 890616 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1267848 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1277115 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1981280 6532144 ~ 6534655 (-) True G407899

Expression Profile