RNA id: TU468106


Basic Information

Item Value
RNA id TU468106
length 999
lncRNA type read_through
GC content 0.32
exon number 3
gene id G407414
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4478989 ~ 4554077 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGGAAGTGCAAAAATAGAAACCACAAACATGCGGCATTGAGTTGGTCTTTCACTCTGATCCGTAGGACACAACTTTAAAGTGCATGTTTAATGTTCATACTTTCCTAAAGACACATAAATCTCCATCTAAATTATATTTTTTGTTTCAAATGGACGTCTTAACACATTTTGCATTTGACAGAGAATTTTATTCAAAGTGATTTACATTGCATTCAATGTTTAGGGGAGACCGGGGATGAAAGTAACACCTTTTGTTTGAGGATTAGTAACTCAGTGGTTGTTTGTGCTAGAGCTCTCAAAATCTGATACATGGTAGTCACATTTGTCTACTACAAATATAACTCACTTGGACAGGTGTCAAAGACGAGTTATGTGAGTTAACGTCAAACACAAAGATTTCCATTGTTACAACCTACTTGTAACACTAGCTGGGGACAGATGAACAATGAGAGGCGATTTGCTGAAATAAGATCCTCACAATCTAAATTTACGTTACTGAAGAATGAGGTGAACCATTTAAAGTGACAAAAAACATTGTAGATTATTACTTTCATCATTTTAAATTTAGCACAAAGTAATTGCTGCACAGAAAGCACCGCGCTTTCCCTTTGTTTTCACAGCAGCTGTCAGTCGCAAGATCAATGATTTCAGCACACTTGTAAAAACACACATTTTATTCAATTAATTTAATTAAAGTGCACAATAAATATTTAATTTTTGAAGCTTTTTTTTCACATAAAAGTGTGAAAACTGATGGTCGAATTGAATTTAGCCGAGGAAGAACAATGAGGTACGTCTTTATTTTTTTAATTTTTTTTTTATGCTCTTACGTTTGAATAACTAAATGAATGCTATGCCTGACTATTTAAGTGACTATATTCTGATTATAAACTACAAACCCGATTCCAAAAATGTACAAATTGTGAATAAAAAAGGAATGCAATAATTTACAAATCTCATAAACTTATATTTTATTCACAATAGAATATAGATAACAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468099 lncRNA downstream 8774 4470012 ~ 4470215 (-) True G407409
TU468098 lncRNA downstream 11969 4466818 ~ 4467020 (-) True G407408
TU468097 lncRNA downstream 12455 4464745 ~ 4466534 (-) False CI01000299_04456420_04468754
TU468090 lncRNA downstream 12922 4464745 ~ 4466067 (-) False CI01000299_04456420_04468754
TU468091 lncRNA downstream 12922 4464877 ~ 4466067 (-) True CI01000299_04456420_04468754
TU468120 lncRNA upstream 17054 4571131 ~ 4586048 (-) True G407420
TU468172 lncRNA upstream 82533 4636610 ~ 4637425 (-) True G407467
TU468183 lncRNA upstream 123033 4677110 ~ 4677446 (-) True G407476
TU468184 lncRNA upstream 123941 4678018 ~ 4678228 (-) True G407477
TU468182 lncRNA upstream 150047 4704124 ~ 4704801 (-) True G407475
CI01000299_04456420_04468754.mRNA mRNA downstream 9539 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04398464_04403711.mRNA mRNA downstream 75278 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04370401_04385955.mRNA mRNA downstream 90969 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04242809_04251680.mRNA mRNA downstream 227124 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 239197 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04587880_04594059.mRNA mRNA upstream 33717 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 49314 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04645836_04651938.mRNA mRNA upstream 91562 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04658984_04668843.mRNA mRNA upstream 104818 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04708767_04714088.mRNA mRNA upstream 154426 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
TU467961 other downstream 314665 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2460939 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2598001 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2818989 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3403098 1070607 ~ 1075891 (-) True G404372
TU468235 other upstream 371891 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 887260 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1264492 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1273759 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1977924 6532144 ~ 6534655 (-) True G407899

Expression Profile