RNA id: TU468172


Basic Information

Item Value
RNA id TU468172
length 230
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G407467
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4636610 ~ 4637425 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTAGTTGTGATGATGTTTTGGATGGTTTCTAGAATGTTACCTGATGGTTGGGCATTGCTAGATGGTTTCTATGATGTTTTGTGTGGTTGCTAAGGTGTTGCTAGGTGATTGTTATGATGTTTTTGTTTTTTTCTAGGATGTTGCTAGGGGTTGTACATTGCTAGGGGTTTCTATGATTTTTTGAGTGGTTGCTGGGGTGTTGCTAAGTGGTTGTTATGATGTTTTGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468120 lncRNA downstream 50562 4571131 ~ 4586048 (-) True G407420
TU468123 lncRNA downstream 72946 4504710 ~ 4563664 (-) True G407422
TU468106 lncRNA downstream 82533 4478989 ~ 4554077 (-) True G407414
TU468137 lncRNA downstream 88804 4523411 ~ 4547806 (-) True G407434
TU468132 lncRNA downstream 122263 4509122 ~ 4514347 (-) True G407429
TU468183 lncRNA upstream 39685 4677110 ~ 4677446 (-) True G407476
TU468184 lncRNA upstream 40593 4678018 ~ 4678228 (-) True G407477
TU468182 lncRNA upstream 66699 4704124 ~ 4704801 (-) True G407475
TU468257 lncRNA upstream 184616 4822041 ~ 4823551 (-) True G407526
TU468295 lncRNA upstream 302266 4939691 ~ 4939939 (-) True G407562
CI01000299_04603421_04609353.mRNA mRNA downstream 27257 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04587880_04594059.mRNA mRNA downstream 42490 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04456420_04468754.mRNA mRNA downstream 167160 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04398464_04403711.mRNA mRNA downstream 232899 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04370401_04385955.mRNA mRNA downstream 248590 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04645836_04651938.mRNA mRNA upstream 8214 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04658984_04668843.mRNA mRNA upstream 21470 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04708767_04714088.mRNA mRNA upstream 71078 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_04741460_04746667.mRNA mRNA upstream 104022 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_04861862_04862244.mRNA mRNA upstream 224152 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
TU468104 other downstream 85889 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 472286 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2618560 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2755622 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2976610 1659655 ~ 1660000 (-) True G404784
TU468235 other upstream 288543 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 803912 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1181144 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1190411 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1894576 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU92619 False 669 lncRNA 0.48 3 NC_053117.1 42535267 ~ 42536075 (-)
tiger barb (Puntius tetrazona) TU92619 True 351 lncRNA 0.25 1 NC_056706.1 9710646 ~ 9710996 (-)
mexican tetra (Astyanax mexicanus) TU92619 True 1072 lncRNA 0.42 2 NC_035903.1 33987761 ~ 33988897 (+)