RNA id: TU466377


Basic Information

Item Value
RNA id TU466377
length 269
lncRNA type read_through
GC content 0.52
exon number 2
gene id G405865
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4649936 ~ 4665044 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGACCTTCACAAAGTATCAACACAGACCTTAAGAATTGGGATATTTTCTTGCTCAGCAAGGAAGACGGCACGGTTGCACAGACCGGCGACACGTGCGAGGGCAGCCCAAGTAGCAGAGCTCCTGTCAAATGAGGCTCCACTCTGGTTCTCTGTGGTGTCTGCTTCATGAATCTGGTTGTCAAACCACATGTGAGCGACGGTCATTCGGTTCTGGGTCAAAGTTCCAGTCTTGTCAGAGCAGATGGTGGAGGTCGAGCCAAGAGTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466460 lncRNA upstream 99137 4475988 ~ 4550799 (+) True G405938
TU466395 lncRNA upstream 139196 4509933 ~ 4510740 (+) True G405878
TU466453 lncRNA upstream 194251 4455446 ~ 4455685 (+) True G405932
TU466452 lncRNA upstream 196067 4453592 ~ 4453869 (+) True G405931
TU466393 lncRNA upstream 200941 4418304 ~ 4448995 (+) True G405876
TU466489 lncRNA downstream 6171 4671215 ~ 4671482 (+) True G405966
TU466490 lncRNA downstream 6481 4671525 ~ 4671895 (+) True G405967
TU466552 lncRNA downstream 25851 4690895 ~ 4766223 (+) True G406023
TU466373 lncRNA downstream 37338 4702382 ~ 4702508 (+) False G405864
TU466523 lncRNA downstream 153444 4818488 ~ 4933935 (+) True G405994
CI01000299_04554181_04557794.mRNA mRNA upstream 92096 4554111 ~ 4557840 (+) True CI01000299_04554181_04557794
CI01000299_04532498_04539703.mRNA mRNA upstream 110017 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
CI01000299_04513358_04524537.mRNA mRNA upstream 123259 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04496757_04504238.mRNA mRNA upstream 145453 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
CI01000299_04480751_04492829.mRNA mRNA upstream 156820 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04703290_04704365.mRNA mRNA downstream 38027 4703071 ~ 4704597 (+) False CI01000299_04703290_04704365
CI01000299_04736806_04740333.mRNA mRNA downstream 71762 4736806 ~ 4740975 (+) True CI01000299_04736806_04740333
CI01000299_04819297_04829755.mRNA mRNA downstream 153641 4818685 ~ 4829987 (+) True CI01000299_04819297_04829755
CI01000299_04864582_04885052.mRNA mRNA downstream 199148 4864192 ~ 4885385 (+) True CI01000299_04864582_04885052
CI01000299_04892566_04900169.mRNA mRNA downstream 225347 4890391 ~ 4900536 (+) True CI01000299_04892566_04900169
TU466383 other upstream 144019 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 329795 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 515995 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1494762 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 4043586 604870 ~ 606350 (+) True G403972
TU466374 other downstream 37338 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 259418 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 706137 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1572794 6237838 ~ 6300508 (+) True G406161

Expression Profile