RNA id: TU466489


Basic Information

Item Value
RNA id TU466489
length 268
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G405966
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4671215 ~ 4671482 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCGATGGCACAAATGTGTAAATAAATAAGAAATAACCACGGAGTGTCTTTAAAAACCCTCTTTTGTGAGGAACTACTTCCTTCCGCCACGGATTCAAATCTCAAGCTGACAGTTTAACAGTTGAGCCCAAGATCCGTTACTAATTCTAAAACGTCACTATAGAACTAGTAACGAAGGAACGTTGAGTTGTTTCATTGAAACTCATTGTAATATGTAGAGTATTATGAAAGAGCGAGTGTATTACCTGCATCTAGCTGATATTCTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466377 lncRNA upstream 6171 4649936 ~ 4665044 (+) False G405865
TU466381 lncRNA upstream 6171 4663934 ~ 4665044 (+) True G405865
TU466398 lncRNA upstream 7820 4658341 ~ 4663395 (+) True G405881
TU466460 lncRNA upstream 120416 4475988 ~ 4550799 (+) True G405938
TU466395 lncRNA upstream 160475 4509933 ~ 4510740 (+) True G405878
TU466490 lncRNA downstream 43 4671525 ~ 4671895 (+) True G405967
TU466552 lncRNA downstream 19413 4690895 ~ 4766223 (+) True G406023
TU466373 lncRNA downstream 30900 4702382 ~ 4702508 (+) False G405864
TU466523 lncRNA downstream 147006 4818488 ~ 4933935 (+) True G405994
TU466536 lncRNA downstream 238435 4910196 ~ 4912524 (+) True G406007
CI01000299_04554181_04557794.mRNA mRNA upstream 113375 4554111 ~ 4557840 (+) True CI01000299_04554181_04557794
CI01000299_04532498_04539703.mRNA mRNA upstream 131296 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
CI01000299_04513358_04524537.mRNA mRNA upstream 144538 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04496757_04504238.mRNA mRNA upstream 166732 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
CI01000299_04480751_04492829.mRNA mRNA upstream 178099 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04703290_04704365.mRNA mRNA downstream 31589 4703071 ~ 4704597 (+) False CI01000299_04703290_04704365
CI01000299_04736806_04740333.mRNA mRNA downstream 65324 4736806 ~ 4740975 (+) True CI01000299_04736806_04740333
CI01000299_04819297_04829755.mRNA mRNA downstream 147203 4818685 ~ 4829987 (+) True CI01000299_04819297_04829755
CI01000299_04864582_04885052.mRNA mRNA downstream 192710 4864192 ~ 4885385 (+) True CI01000299_04864582_04885052
CI01000299_04892566_04900169.mRNA mRNA downstream 218909 4890391 ~ 4900536 (+) True CI01000299_04892566_04900169
TU466383 other upstream 165298 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 351074 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 537274 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1516041 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 4064865 604870 ~ 606350 (+) True G403972
TU466374 other downstream 30900 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 252980 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 699699 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1566356 6237838 ~ 6300508 (+) True G406161

Expression Profile