RNA id: TU466490


Basic Information

Item Value
RNA id TU466490
length 371
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G405967
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4671525 ~ 4671895 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGCTGAGGATATGACGATATCTTTGTCCTTTTAACATTTAAGAGGATTTCCCATGACAGTGCTAGTCAATGCATTTGTCAGTTGCGTCTCGTAAGATGTTGTTTAAAGTAAAAACATTGTCCTTGTTTCCTTGTTTCAGTCCATTTCAATATAAAAGTCTTTGCAAACAGTTCAGTCAAATGTACAAAAGCAGTGCTCTAGTTAGTACAGGATTTAATTTCAATGTAAATATAAAGTTGTGAAACTTAATATAGCCCTTAAGCCAAATCTATTAGCTCTGGAACAAGTAATAGATTAATAAGACCAAGGATTGCCTGTTTGATATACCCAAAACGAATTATACCTCATGTTTAAGCACTATCTACATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466489 lncRNA upstream 43 4671215 ~ 4671482 (+) True G405966
TU466377 lncRNA upstream 6481 4649936 ~ 4665044 (+) False G405865
TU466381 lncRNA upstream 6481 4663934 ~ 4665044 (+) True G405865
TU466398 lncRNA upstream 8130 4658341 ~ 4663395 (+) True G405881
TU466460 lncRNA upstream 120726 4475988 ~ 4550799 (+) True G405938
TU466552 lncRNA downstream 19000 4690895 ~ 4766223 (+) True G406023
TU466373 lncRNA downstream 30487 4702382 ~ 4702508 (+) False G405864
TU466523 lncRNA downstream 146593 4818488 ~ 4933935 (+) True G405994
TU466536 lncRNA downstream 238022 4910196 ~ 4912524 (+) True G406007
TU466528 lncRNA downstream 262420 4934315 ~ 4936448 (+) True G405999
CI01000299_04554181_04557794.mRNA mRNA upstream 113685 4554111 ~ 4557840 (+) True CI01000299_04554181_04557794
CI01000299_04532498_04539703.mRNA mRNA upstream 131606 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
CI01000299_04513358_04524537.mRNA mRNA upstream 144848 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04496757_04504238.mRNA mRNA upstream 167042 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
CI01000299_04480751_04492829.mRNA mRNA upstream 178409 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04703290_04704365.mRNA mRNA downstream 31176 4703071 ~ 4704597 (+) False CI01000299_04703290_04704365
CI01000299_04736806_04740333.mRNA mRNA downstream 64911 4736806 ~ 4740975 (+) True CI01000299_04736806_04740333
CI01000299_04819297_04829755.mRNA mRNA downstream 146790 4818685 ~ 4829987 (+) True CI01000299_04819297_04829755
CI01000299_04864582_04885052.mRNA mRNA downstream 192297 4864192 ~ 4885385 (+) True CI01000299_04864582_04885052
CI01000299_04892566_04900169.mRNA mRNA downstream 218496 4890391 ~ 4900536 (+) True CI01000299_04892566_04900169
TU466383 other upstream 165608 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 351384 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 537584 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1516351 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 4065175 604870 ~ 606350 (+) True G403972
TU466374 other downstream 30487 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 252567 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 699286 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1565943 6237838 ~ 6300508 (+) True G406161

Expression Profile