RNA id: TU468183


Basic Information

Item Value
RNA id TU468183
length 337
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G407476
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4677110 ~ 4677446 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCTGACTGTACATGAATCATTAATATCAGATCAGGCATTAGAATTAACACAGTTACTGACATGTTGTTGCATTACTGTCGAGTCCATATCGTAAAAGTCTGTTTGCAAAGCCTGCGCCAAAATGCGATTGATTTACCAAAGAATCCACAGTGAAATGTACCGAATACAAATAAATAAAGCTCAACTGAGACATTCACATTGTTGAAAATAAATAACCATATTCCTAGCATTAGGATCCTTTGAAAGGTAATGTTATTTTAGTCCTGTATCGCTCTTCTCTCCTCCTCATCTCACTAACACGCCAGTGGGCGGGGCTAACGCTGCAATGATGAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468172 lncRNA downstream 39685 4636610 ~ 4637425 (-) True G407467
TU468120 lncRNA downstream 91062 4571131 ~ 4586048 (-) True G407420
TU468123 lncRNA downstream 113446 4504710 ~ 4563664 (-) True G407422
TU468137 lncRNA downstream 129304 4523411 ~ 4547806 (-) True G407434
TU468132 lncRNA downstream 162763 4509122 ~ 4514347 (-) True G407429
TU468184 lncRNA upstream 572 4678018 ~ 4678228 (-) True G407477
TU468182 lncRNA upstream 26678 4704124 ~ 4704801 (-) True G407475
TU468257 lncRNA upstream 144595 4822041 ~ 4823551 (-) True G407526
TU468295 lncRNA upstream 262245 4939691 ~ 4939939 (-) True G407562
TU468297 lncRNA upstream 278652 4956098 ~ 4956365 (-) True G407564
CI01000299_04658984_04668843.mRNA mRNA downstream 8088 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04645836_04651938.mRNA mRNA downstream 25172 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04603421_04609353.mRNA mRNA downstream 67757 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04587880_04594059.mRNA mRNA downstream 82990 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04456420_04468754.mRNA mRNA downstream 207660 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04708767_04714088.mRNA mRNA upstream 31057 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_04741460_04746667.mRNA mRNA upstream 64001 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_04861862_04862244.mRNA mRNA upstream 184131 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04913779_04927715.mRNA mRNA upstream 235927 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_05379545_05381902.mRNA mRNA upstream 701703 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
TU468104 other downstream 126389 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 512786 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2659060 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2796122 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 3017110 1659655 ~ 1660000 (-) True G404784
TU468235 other upstream 248522 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 763891 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1141123 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1150390 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1854555 6532144 ~ 6534655 (-) True G407899

Expression Profile