RNA id: TU468182


Basic Information

Item Value
RNA id TU468182
length 600
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G407475
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4704124 ~ 4704801 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCCATACAGAAAAAAGTATTTTATTTGGTTTATTAGGCTTAACATGCTGTATATCACACCTGTCACTCATTATGAGCTGTTTGCATTTACAGCATTGGGGAAAAAACAAACTTTTGTTTTATTCTTACTCATAAATTCTGAGCTATTTCAACTAAATTATGAACACACAGCAAGGATGGATATACATACAAAAACTTTTTATTTACAAACGTCAGAGATAATAAATAAAAACTGTGTATAAAAACAAGACTTTTGCAGCAATCCATGTTGTAAACAGCAGACAGAAGTTCAACAGCTGAATCCACAACAGGCCCACAAACGACACGCGTCACTCTGTTTTTCTCACGAATCCCATGTCAGTCGTCCTTCTTGTTCTCGATGAGCTCCTGCGTTTGCTGTGCGAGTTTCTTCTTCATCTCCATCTGCTGTTTCAGAGCAGCGTCTGCTTTCCTGCTCTGATAGATCTTTGCTCCAGCGAACGCCAAACACAGCAGCAGCGTCTTCGCTGCCAGGATGTACAGCAGCAACGGCACATTGTCCAAAGCCTGAGAACATACAATTACACACACCATTGTGACAAGAAGCATACAAGAAACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468184 lncRNA downstream 25896 4678018 ~ 4678228 (-) True G407477
TU468183 lncRNA downstream 26678 4677110 ~ 4677446 (-) True G407476
TU468172 lncRNA downstream 66699 4636610 ~ 4637425 (-) True G407467
TU468120 lncRNA downstream 118076 4571131 ~ 4586048 (-) True G407420
TU468137 lncRNA downstream 156318 4523411 ~ 4547806 (-) True G407434
TU468257 lncRNA upstream 117240 4822041 ~ 4823551 (-) True G407526
TU468295 lncRNA upstream 234890 4939691 ~ 4939939 (-) True G407562
TU468297 lncRNA upstream 251297 4956098 ~ 4956365 (-) True G407564
TU468298 lncRNA upstream 253186 4957987 ~ 4996909 (-) True G407565
TU468329 lncRNA upstream 380593 5085394 ~ 5182362 (-) False G407591
CI01000299_04658984_04668843.mRNA mRNA downstream 35102 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04645836_04651938.mRNA mRNA downstream 52186 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04603421_04609353.mRNA mRNA downstream 94771 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04587880_04594059.mRNA mRNA downstream 110004 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04456420_04468754.mRNA mRNA downstream 234674 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04708767_04714088.mRNA mRNA upstream 3702 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_04741460_04746667.mRNA mRNA upstream 36646 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_04861862_04862244.mRNA mRNA upstream 156776 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04913779_04927715.mRNA mRNA upstream 208572 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_05379545_05381902.mRNA mRNA upstream 674348 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
TU468104 other downstream 153403 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 539800 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2686074 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2823136 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 3044124 1659655 ~ 1660000 (-) True G404784
TU468235 other upstream 221167 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 736536 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1113768 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1123035 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1827200 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU386 True 392 lncRNA 0.47 2 NC_056699.1 1441088 ~ 1441512 (-)