Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU466523 |
| length | 2342 |
| lncRNA type | read_through |
| GC content | 0.37 |
| exon number | 4 |
| gene id | G405994 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 4818488 ~ 4933935 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU466552 | lncRNA | upstream | 52265 | 4690895 ~ 4766223 (+) | True | G406023 |
| TU466373 | lncRNA | upstream | 113708 | 4702382 ~ 4702508 (+) | False | G405864 |
| TU466490 | lncRNA | upstream | 146593 | 4671525 ~ 4671895 (+) | True | G405967 |
| TU466489 | lncRNA | upstream | 147006 | 4671215 ~ 4671482 (+) | True | G405966 |
| TU466377 | lncRNA | upstream | 153444 | 4649936 ~ 4665044 (+) | False | G405865 |
| TU466528 | lncRNA | downstream | 380 | 4934315 ~ 4936448 (+) | True | G405999 |
| TU466657 | lncRNA | downstream | 22215 | 4956150 ~ 4956356 (+) | True | G406101 |
| TU466701 | lncRNA | downstream | 322804 | 5256739 ~ 5257212 (+) | True | G406134 |
| TU466774 | lncRNA | downstream | 378233 | 5312168 ~ 5745426 (+) | True | G406203 |
| TU466521 | lncRNA | downstream | 442332 | 5376267 ~ 5379015 (+) | True | G405992 |
| CI01000299_04736806_04740333.mRNA | mRNA | upstream | 77513 | 4736806 ~ 4740975 (+) | True | CI01000299_04736806_04740333 |
| CI01000299_04703290_04704365.mRNA | mRNA | upstream | 113891 | 4703071 ~ 4704597 (+) | False | CI01000299_04703290_04704365 |
| CI01000299_04554181_04557794.mRNA | mRNA | upstream | 260648 | 4554111 ~ 4557840 (+) | True | CI01000299_04554181_04557794 |
| CI01000299_04532498_04539703.mRNA | mRNA | upstream | 278569 | 4532098 ~ 4539919 (+) | True | CI01000299_04532498_04539703 |
| CI01000299_04513358_04524537.mRNA | mRNA | upstream | 291811 | 4513358 ~ 4526677 (+) | True | CI01000299_04513358_04524537 |
| CI01000299_05128395_05192154.mRNA | mRNA | downstream | 194413 | 5128348 ~ 5192994 (+) | True | CI01000299_05128395_05192154 |
| CI01000299_05254419_05314859.mRNA | mRNA | downstream | 320484 | 5254419 ~ 5316243 (+) | True | CI01000299_05254419_05314859 |
| CI01000299_05331367_05364944.mRNA | mRNA | downstream | 397266 | 5331201 ~ 5364977 (+) | True | CI01000299_05331367_05364944 |
| CI01000299_05392812_05418070.mRNA | mRNA | downstream | 458757 | 5392692 ~ 5418352 (+) | True | CI01000299_05392812_05418070 |
| CI01000299_05619817_05725510.mRNA | mRNA | downstream | 685769 | 5619704 ~ 5727439 (+) | True | CI01000299_05619817_05725510 |
| TU466374 | other | upstream | 113863 | 4702382 ~ 4702508 (+) | True | G405864 |
| TU466383 | other | upstream | 312571 | 4505404 ~ 4505917 (+) | True | G405866 |
| TU466350 | other | upstream | 498347 | 4295533 ~ 4320141 (+) | True | G405842 |
| TU466041 | other | upstream | 684547 | 4131258 ~ 4133941 (+) | True | CI01000299_04131136_04133439 |
| TU466101 | other | upstream | 1663314 | 3154597 ~ 3155174 (+) | True | G405609 |
| TU466818 | other | downstream | 437246 | 5371181 ~ 5373579 (+) | True | G406244 |
| TU466732 | other | downstream | 1303903 | 6237838 ~ 6300508 (+) | True | G406161 |
