RNA id: TU468257


Basic Information

Item Value
RNA id TU468257
length 1479
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G407526
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4822041 ~ 4823551 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAATGCAATATTTATAGTAAAATAAAATAAAATAAAATAAAATAAAATAAAATTATTTTTATGGAACCATGCAGAACTTTCAGTTAGGATTATACTTAAGCAAAATGCTCAAATGCTTAAAAGCTACAAGGATTATTTGTGCATAAAAGGTGAAGCATTTTTAAAACAGCATCATATAACAAGAATTTCTCAAGAAAGAAGTAAAAGTCCCAATGCACATCTTTAACGCAGGTTCTACTTCAATTCAGTCTTGTTGTATTCACTGGTTTATCTTATTTTACATGCTTTTCCTGTATCTCAATCATCAAATCAACAAACTCTACCCCAGCACACTTTTCCTACAAAGTCAAAATCGGCTCACAACTGAAGCTTTCTGACTCAAAGAAACGAATTTCCAGACATCAACTTCATTAATCTATTGAGGGTTCAGAATTCAATACGGCTTTTTAAACTATTAAAGCAAACTCTAAGACTCAACAACTATAAAAGTTTTTAAAAAGTTAGTTTCACGGTGCAAGACTTGCCATAAATAAACAACAAACTCAAGTTGGCACAATGCAAGAACCGAAAAGTTTTCAAACTAATATTGCAGATGATAAAACTCTCATACAGCTCCCGCTCTCCAGCTGGAAAACGTCTAAAGAAGCCACGTTGGAGTCCAGCATGCAGTGGCTGGTTGAATGAGGTTAACCAGTGAAGTACTCAGTAACCCACAGACCTGTGGTTTTCAGATTCAGCCACAAGATTTCAGTACTCCACTGACACTGCAAACCAGCTCCTCGGCGTCGTCATTTTGCGCAAACATCGGCATCGATGCGGAGATAAGAGCTTGCACAAAAAAAAAAAAAAAAAAAAAAATCGCGCCCTCGATACTCACCCCGGGTGAAGCACGACTGGTAGGACGGGAAGCTTTCGAAGATGCTGTTGGAGGCCATCGCGAGCGGCGGCTGCTCCTCGTCTTCGTCTGAATCCAAGGCTTCCAACTTGATCTGCTCCCGAATTTTGAAAGGCTCCCGGTTTTGCCCTGCAAAAAGCAAAAAAAATGCCCGTGACGACATGCAAGAGGTTTCGCTCGAACACCACCCCCTAATCCCCAAACCCTGACATGCAGTACACACCCACACCAGGGAACCCATGGTCACCCTGTGCCGGTCCGGTGAGGCGGTTCTGTCCTGGGATTCTGTGCATGGCTCACAGACACGGGAGATTGCGATCGGCGGTCAGCCTGTGGTTGACTGATGCTTACCCTTTTGCAAAAGAGCAGGAGCGCAAACGTGTCGCTGTGGTTTTTTCCGGCGATTCACACGCTGACATCAACACGTATTCTCCCTCCCCCTTCTCGCTCTTCAGTCCCTCTTGTCTATCTTTATCTTGCAGTTCTCTAGTGCCTAGAGAGCCGTGACCGGTCGCAGACTTGGTTTGTGGTTGTGGCGGCCCACAGAAAGCGTCTCCCTTAGACAGACAACAAGTTTAACCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468182 lncRNA downstream 117240 4704124 ~ 4704801 (-) True G407475
TU468184 lncRNA downstream 143813 4678018 ~ 4678228 (-) True G407477
TU468183 lncRNA downstream 144595 4677110 ~ 4677446 (-) True G407476
TU468172 lncRNA downstream 184616 4636610 ~ 4637425 (-) True G407467
TU468120 lncRNA downstream 235993 4571131 ~ 4586048 (-) True G407420
TU468295 lncRNA upstream 116140 4939691 ~ 4939939 (-) True G407562
TU468297 lncRNA upstream 132547 4956098 ~ 4956365 (-) True G407564
TU468298 lncRNA upstream 134436 4957987 ~ 4996909 (-) True G407565
TU468329 lncRNA upstream 261843 5085394 ~ 5182362 (-) False G407591
TU468330 lncRNA upstream 261843 5085394 ~ 5111234 (-) True G407591
CI01000299_04741460_04746667.mRNA mRNA downstream 75374 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_04708767_04714088.mRNA mRNA downstream 107953 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_04658984_04668843.mRNA mRNA downstream 153019 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04645836_04651938.mRNA mRNA downstream 170103 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04603421_04609353.mRNA mRNA downstream 212688 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04861862_04862244.mRNA mRNA upstream 38026 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04913779_04927715.mRNA mRNA upstream 89822 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_05379545_05381902.mRNA mRNA upstream 555598 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
CI01000299_05419449_05423414.mRNA mRNA upstream 595852 5419403 ~ 5423414 (-) True CI01000299_05419449_05423414
CI01000299_05428160_05443433.mRNA mRNA upstream 604110 5427661 ~ 5443433 (-) False CI01000299_05428160_05443433
TU468104 other downstream 271320 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 657717 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2803991 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2941053 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 3162041 1659655 ~ 1660000 (-) True G404784
TU468235 other upstream 102417 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 617786 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 995018 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1004285 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1708450 6532144 ~ 6534655 (-) True G407899

Expression Profile