RNA id: TU466651



Basic Information


Item Value
RNA id TU466651
length 2040
RNA type TUCP
GC content 0.44
exon number 2
gene id G406096
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4924462 ~ 4927844 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAGACGTGGAGGTGTCTTGCTGGCACTACGTCGAGTTCTGGACGTTGATCTTTTCTTGCGGAGAATGAGGACCGGAGAGCGACTGGGTTCTCGCTTCCATCTGTCCCGCTGATTTAGCGATCGGCTTCCGAAACCTCTTTTCCAGCGTGAGCTGGATCGAGATCTCCTCCTCGAATGCGAGCGAGACCTCTTTCTTGATTTAGACCGTCTGCTTCTGTCTGGAGTTCGAGATTTTCTCCTACGGCCTTGTGAGCGAGATCTCGATCTTCTCTTTTTGGGTGACCTCGATTTCGAACGTTTGCTCTTTGTTCTGGACTTGTGTGATTTTCTTTCAGAGGGCGATCGAGACTTTCGTGAAGACGACCTGGATTTTCTCTTTTTCGATAATGACTTTGATCTGGATCGTGTAGTTACTTTGGATCTTGAGGACGTTTGTTGACTGGGAGATTTGGATGGTGAGGTTGAGTTCCTCTCGATTGAAGTCTCTACACCGGTTATTGGATTTGTGTTGGTTTCTTTCTTGTCAGGGTTGGCAGCGCACTCTGAATCTTTTGGCGTAACGGTTGAAAACGTTGAGGGTTCTTCAGATACACTGGTCACTTCCAAAGGCACCTCAGGTGTAATGCACTTTTGGGAAGACTTGGTCTCAGATGGCTCTGCCAAGAAGGGAACTGGTCGCCAAGATCCTGTGACGCCAACTGCGTTGAAACCAGAACTCGTGCTGATGGACGCAACCTCAAACAACTTGCTGTCAGAGTTCACAGGCATTGTTGGACTTCTTCCATTCTCAGTTGTATTCTGAGACATTTCCATTGCACAGCTTGTATTACTGTCCACTGCTGGATCTGTATCATTCTTAACTGATTCAGTTTCCTTCAGACTTTCTTTCAGATCAGACCTTGATTTTGAAACGGACCTTGATTTAGAAGGTTTCGTTCTACTTCGAGACTTACTTTTGGAACGCCGTGGCGAACGAGACCTAGTTTTTGACACGGACCTTCTGTTCTTCCTCGAGATCACAATAGACCTTGATCTAGTTCGCCTGGAGTGCGACCTGGATCTTGAATGTTTACCTCTTCTGACAGAATGAGACCTGGACCGATTGTTGCGTCTCTTTGACCTTGATCTACTTCTCTCTCTCTGTTGATGAGACCTCTTTTTGGAGCTATTTCTAGAGCGGGAGGTTGACTTTGATCGCCGTTGTCGTTTTGAAGACCGGGATCTTGATCTCCGTCCTGACTTCCATCGGGGTGATCTTGATCCTCTAGAAGTCTCCTTACTTTTAGATATTCTGCTAGAACTTGTTTTCTTATCCTTGGGCCTTTCGTTTTCAGTGCCTTTGTGGACAGAATTCTCCATCTTGGGAATAATGTCAGGCAAAACATCAGATGTGTCTTTGAGCTCAGACTTTAAAATCTTACCTGCTGAAGAGGACTTAGTATTTTCATTAGAAGGTTTTGATTCAGACTCAGATTCAGAACCAGATGCTGAAGAGCTTTCAGACCGTGAGCCAGACCTCTTCGCTTTGTCTGCATCTTTGCTTTTTTTCTTCTTCTTTCTCTTCTTTTTCTTTCCACTTCGTGCGTCTCTTTGTCGGACTCAGACTCAGAGCTGCTGTCTTTTCCTTCTTTCCGTTTCTTTCTCTTCTTTTTGCTTTTGTGTTTTTTGTGCTTTTTACTCTTCCTGTGTTTAGTGCTGGTGTCCTCTTTACCATGGTTATCTTGGAGGTCAGTATGTGTGATTTTATCTGCAGTGAAAGCAAAGACTTATTAGTGACAAAATATATATGTCAGAAAACACAAAAAACATAGGTGTATTGACGACTAACCTGTTGGTGTGTTAATTTTTTCTTCCTTTAGTCCATCTTCTATCATCTCTGTCACAGGTTCAGACTGTGGCTCATCTGTCACACTGAATGAAAAAACATTTTATTACTCATTTAAAACACGATGTAGATGTAGATGTAGATTAAGTCCATTGTCTTTGTTGATTCCCAACACGTGTCTGTCATCCACAATGTATAATTCAACAGAATTGTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU466536 lncRNA upstream 11938 4910196 ~ 4912524 (+) True G406007
TU466552 lncRNA upstream 158239 4690895 ~ 4766223 (+) True G406023
TU466373 lncRNA upstream 219682 4702382 ~ 4702508 (+) False G405864
TU466490 lncRNA upstream 252567 4671525 ~ 4671895 (+) True G405967
TU466489 lncRNA upstream 252980 4671215 ~ 4671482 (+) True G405966
TU466528 lncRNA downstream 6471 4934315 ~ 4936448 (+) True G405999
TU466657 lncRNA downstream 28306 4956150 ~ 4956356 (+) True G406101
TU466701 lncRNA downstream 328895 5256739 ~ 5257212 (+) True G406134
TU466774 lncRNA downstream 384324 5312168 ~ 5745426 (+) True G406203
TU466521 lncRNA downstream 448423 5376267 ~ 5379015 (+) True G405992
CI01000299_04906697_04907091.mRNA mRNA upstream 14389 4906697 ~ 4910073 (+) False CI01000299_04906697_04907091
CI01000299_04892566_04900169.mRNA mRNA upstream 23926 4890391 ~ 4900536 (+) True CI01000299_04892566_04900169
CI01000299_04864582_04885052.mRNA mRNA upstream 39077 4864192 ~ 4885385 (+) True CI01000299_04864582_04885052
CI01000299_04819297_04829755.mRNA mRNA upstream 94475 4818685 ~ 4829987 (+) True CI01000299_04819297_04829755
CI01000299_04736806_04740333.mRNA mRNA upstream 183487 4736806 ~ 4740975 (+) True CI01000299_04736806_04740333
CI01000299_05128395_05192154.mRNA mRNA downstream 200504 5128348 ~ 5192994 (+) True CI01000299_05128395_05192154
CI01000299_05254419_05314859.mRNA mRNA downstream 326575 5254419 ~ 5316243 (+) True CI01000299_05254419_05314859
CI01000299_05331367_05364944.mRNA mRNA downstream 403357 5331201 ~ 5364977 (+) True CI01000299_05331367_05364944
CI01000299_05392812_05418070.mRNA mRNA downstream 464848 5392692 ~ 5418352 (+) True CI01000299_05392812_05418070
CI01000299_05619817_05725510.mRNA mRNA downstream 691860 5619704 ~ 5727439 (+) True CI01000299_05619817_05725510
TU466374 other upstream 219837 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 418545 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 604321 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 790521 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1769288 3154597 ~ 3155174 (+) True G405609
TU466818 other downstream 443337 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1309994 6237838 ~ 6300508 (+) True G406161

Expression Profile