RNA id: TU466701


Basic Information

Item Value
RNA id TU466701
length 432
lncRNA type intronic
GC content 0.34
exon number 2
gene id G406134
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5256739 ~ 5257212 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTTATTAAATTGACAGAATGAAATAGTAAATCGTGCGCACAATTTAGCAAATTTAGGGAACGAAATAGTAAATCTTGCGCACGATCTATTAAATCGATGGAACGAAATAGTAAATCTTGCGCACGATCTATTAAATCGATGGAACGAAATAGTAAATTGTGCGCACGATTTAGCAAATCGATGGAACGAAATAGTAAATCTTGCGCCTGATTCTCTGAACGTTCTGAATCAAGTAGTAACATTTAAAAAAAAAATTAGACAAATGTCCAACAAAAACATTTCAGAAAAAACACTCCATAAATAACATTATTCATGAGAGCACTAGATAACTTTGAACAAACGTTACTGGAAGAACGTTTGTTCATAACTTTAAGAGAACCTTGTCAGAACATTAGCTAAAGTTCTGAGAATGTTCCCTGTTAGCTGGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466657 lncRNA upstream 300383 4956150 ~ 4956356 (+) True G406101
TU466528 lncRNA upstream 320291 4934315 ~ 4936448 (+) True G405999
TU466523 lncRNA upstream 322804 4818488 ~ 4933935 (+) True G405994
TU466536 lncRNA upstream 344215 4910196 ~ 4912524 (+) True G406007
TU466552 lncRNA upstream 490516 4690895 ~ 4766223 (+) True G406023
TU466774 lncRNA downstream 54956 5312168 ~ 5745426 (+) True G406203
TU466521 lncRNA downstream 119055 5376267 ~ 5379015 (+) True G405992
TU466513 lncRNA downstream 167377 5424589 ~ 5429645 (+) False G405987
TU466514 lncRNA downstream 167377 5424589 ~ 5428247 (+) True G405987
TU466892 lncRNA downstream 295430 5552642 ~ 5554868 (+) True G406315
CI01000299_05128395_05192154.mRNA mRNA upstream 63745 5128348 ~ 5192994 (+) True CI01000299_05128395_05192154
CI01000299_04906697_04907091.mRNA mRNA upstream 346666 4906697 ~ 4910073 (+) False CI01000299_04906697_04907091
CI01000299_04892566_04900169.mRNA mRNA upstream 356203 4890391 ~ 4900536 (+) True CI01000299_04892566_04900169
CI01000299_04864582_04885052.mRNA mRNA upstream 371354 4864192 ~ 4885385 (+) True CI01000299_04864582_04885052
CI01000299_04819297_04829755.mRNA mRNA upstream 426752 4818685 ~ 4829987 (+) True CI01000299_04819297_04829755
CI01000299_05331367_05364944.mRNA mRNA downstream 73989 5331201 ~ 5364977 (+) True CI01000299_05331367_05364944
CI01000299_05392812_05418070.mRNA mRNA downstream 135480 5392692 ~ 5418352 (+) True CI01000299_05392812_05418070
CI01000299_05619817_05725510.mRNA mRNA downstream 362492 5619704 ~ 5727439 (+) True CI01000299_05619817_05725510
CI01000299_05732790_05737401.mRNA mRNA downstream 475578 5732790 ~ 5737802 (+) True CI01000299_05732790_05737401
CI01000299_05778912_05790662.mRNA mRNA downstream 521351 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
TU466651 other upstream 328895 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 552114 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 750822 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 936598 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 1122798 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466818 other downstream 113969 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 980626 6237838 ~ 6300508 (+) True G406161

Expression Profile