RNA id: TU466818


Basic Information

Item Value
RNA id TU466818
length 1651
RNA type TUCP
GC content 0.44
exon number 3
gene id G406244
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5371181 ~ 5373579 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATCATTTCCATCTTATGTTTCTTGTCCCTTGACAGACCCAAAGGAAAAGGACAGTGATTCCCAAACCACAGAGAAATGTTCCCGAATGACTGTTGATGAATATCAAGCCACAACCTTGACAGAGACTCAGAAGAAGCTGAAATAAATGGAGGAAAATGAAAAATTGAGAAATGACAACAAAAAAGAGCAACGTTGCAAAAAGTGTCCTCATGTGGTGCCCTCCAGCATTGGTGCAGCCATCAATGCCAAACTTACTGAAATTACAGGGAAGAAGAAAACAAAAACATCCGAAAACCTTAATGCTCTTTGATGATTGATAGCCATGACAGTGTGTTCAAGTCATTGACCGCGGCTCCAGCCCTTGAACCCGTCCCCCATCCGAGATGGCTGCCATTCCAGTGTCTCGTCCTGAGATGGCCGTCGTTCCAGAATCTCTTACCGTCATGGCCGCCGTTCCAGAATCTCTTACCGTCACGGCCGCCATTCCCATGTCTCTTTCCGTCATGGTCACTGGTCCAGAGTCTCGTCCTGTCATGGCCGCCATCCCCGAGTCTCATCCCGTCATGGCCGCCGTTCCAGAGTCTTGTCCCGTCATGGCTGCCGAATCTGAGCCCTCAGCCAAAATGCCCACCACATCTGGGCCCTCAGCCAAAACGGCCGCCACCACGCCTATAACTCTAACTTCCTTCCTCGTCCGGGATCCAGAAATGACCTCCTTCCTCGTCCAGAGATGACTCCCTTCCTCATCGAGAGCCCAGAGATGGCTCCAGCCCGAGTCTGCTCCAGTGTCAGCTCCAGCCCCTGAGCCTGCTCCAGTGTTGGCTCCAGCCCCTGAGCCCACTCCAGTGTCACTCCAGCCCCTGAGCCCGCTCCGGTGTCGGCTCCAGCCCCTAATAGGCCTATAAACTCTAAAAATGTTGGGTTAAAAACAACCCAAGTTAGGTTAAATACATTAAAGGTCTGTGTAGCATGACTCAAATGAGAAGTGCTCTTTCTTTCCGCATCTGGCGCGCTCTGTAGTACGACGTATAACAAGTTATAATCGCACTTGTATGAAAAAAGTACAAATATAAAGTTCAAATTTAGCTGTGATTATGAAAGATTATCACGAAGACCATAAAACATCTGAATGTCATTTGCTGACACCTAGGCTTAGGCTACCTAGTTTATTGGAATACATTTCACAAGACAATATTATTACCAGAATAAGGTACATCTCTAAACAGTTTCGCTAGTATAATGTTATAATTATTTTATTGCTAGCGCGCTAACTGGGATAGCTAGGATTCATTTCCAATTGATTTCACTTTCCGGAGAATGTTAAAACTGACTAAAGAGAATTTCTTACTCGAAACTTCATTTTGAAAATATAAAATTCAGTTTTAGAATATATGTAATGTTTCAGTATACATTATCTAATGTTATAAAAGTTATATACATGAAAAACGATAGGACTTACCTTTTATAATAAGACTGCAGCAGCTTCTTTCTGTTGACAGTCACTGGACTATTAAAATTTGAACCGTCGTTGCGGGAACTGTATTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTTGTTCCACACCCGTAAGACCTTCGTTCATCTTCAGAACGCAAATTACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466701 lncRNA upstream 113969 5256739 ~ 5257212 (+) True G406134
TU466657 lncRNA upstream 414825 4956150 ~ 4956356 (+) True G406101
TU466528 lncRNA upstream 434733 4934315 ~ 4936448 (+) True G405999
TU466523 lncRNA upstream 437246 4818488 ~ 4933935 (+) True G405994
TU466536 lncRNA upstream 458657 4910196 ~ 4912524 (+) True G406007
TU466521 lncRNA downstream 2688 5376267 ~ 5379015 (+) True G405992
TU466513 lncRNA downstream 51010 5424589 ~ 5429645 (+) False G405987
TU466514 lncRNA downstream 51010 5424589 ~ 5428247 (+) True G405987
TU466892 lncRNA downstream 179063 5552642 ~ 5554868 (+) True G406315
TU466941 lncRNA downstream 261169 5634748 ~ 5639866 (+) True G406354
CI01000299_05331367_05364944.mRNA mRNA upstream 6204 5331201 ~ 5364977 (+) True CI01000299_05331367_05364944
CI01000299_05254419_05314859.mRNA mRNA upstream 54938 5254419 ~ 5316243 (+) True CI01000299_05254419_05314859
CI01000299_05128395_05192154.mRNA mRNA upstream 178187 5128348 ~ 5192994 (+) True CI01000299_05128395_05192154
CI01000299_04906697_04907091.mRNA mRNA upstream 461108 4906697 ~ 4910073 (+) False CI01000299_04906697_04907091
CI01000299_04892566_04900169.mRNA mRNA upstream 470645 4890391 ~ 4900536 (+) True CI01000299_04892566_04900169
CI01000299_05392812_05418070.mRNA mRNA downstream 19113 5392692 ~ 5418352 (+) True CI01000299_05392812_05418070
CI01000299_05619817_05725510.mRNA mRNA downstream 246125 5619704 ~ 5727439 (+) True CI01000299_05619817_05725510
CI01000299_05732790_05737401.mRNA mRNA downstream 359211 5732790 ~ 5737802 (+) True CI01000299_05732790_05737401
CI01000299_05778912_05790662.mRNA mRNA downstream 404984 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
CI01000299_05799020_05801977.mRNA mRNA downstream 425363 5798942 ~ 5802114 (+) True CI01000299_05799020_05801977
TU466651 other upstream 443337 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 666556 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 865264 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1051040 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 1237240 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466732 other downstream 864259 6237838 ~ 6300508 (+) True G406161

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014055 True 747 mRNA 0.43 2 PESF01000031.1 159996 ~ 180569 (+)