RNA id: TCONS_00003316


Basic Information

Item Value
RNA id TCONS_00003316
length 1541
lncRNA type sense_over
GC content 0.49
exon number 7
gene id XLOC_000965
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5504128 ~ 5543065 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGGCGGAGCTGCAGTACTGTACAGTCAGGGGAAGCAGCCGAAATACAGTCAAAGCCAGAAGCTGCTCTCCATAACGCGGGTGAAAATGACCCGTGAGTCAGTAAAGAGACTCCTGCTGCTGCTGTGCATCGGCGGATCTGTCCACTGCATGCCACAATCCGCAGGGAAAAGTAAAAGACAAGCCCAGCAGCAGCAAATCCACCTGGACACAGTTTACGAAGAGGCCAGGAGTTTAGCCATCCACGAAAGTGGCTGTAATGACAACGGTCGTGTTTACAGGATGAACGATGAGTGGGAGCGGCCCTACATGGACAGCACTCTCAAGTGCACTTGTGAGGGAGCTTCAGGGGTCAAGTGTAGATCCAAACCTGCAGCTGAGGAGTCATGCTATGATAAATTCAACGCACGTTCCTACCGAGTCGGAGAGACCTACGAGCGACCAAAGGATAACATGATATGGGACTGTACATGTATTGGGTCAGGCAAGGGCAAAATTAGCTGCACCATTGCAAATCGCTGCCATGAAGGGGGGAATTCATACAGAATTGGGGACACCTGGACACGACCACACGACACTGGAGACTACATGCTTGAATGTGTTTGCCTTGGCAATGGAAAGGGAGAGTGGACTTGTAAACCTGTTGCGGAGCGTTGCTATGATGACTCACTGGGATCTTCATATGTGGTTGGTCAGACATGGCAGAAACCATATCAAGGTTGGATGATCGTGGACTGCACATGTTTGGGAGAGGGAAACGGACGCATCACCTGCACCTCCAGAAACCGCTGCAATGACCAGGACACCAGAACCTCATACCGTATTGGTGAAACCTGGAGCAAAATTGACTCCAGCGGACACACTCTGCAGTGTCTTTGCACAGGGAACGGTCGTGGGGAGTGGAAGTGTGACAGACATGCTGCTTCCCATGTAATTCCTGCCATTGGTACTGGATCTGCAGTGACTCACAGAGTTACACCAGTGATGAACCAAGTCAACGTCCTGAATGAACTTATCGAAGAGGGCAACTGCAAGACCGATTCTGGGGTGTCCTATTACAATGGCATGAGCTGGATCAGAACTCAGGGCACCAAGGAGATGCTGTGCACTTGTGTTGGAGGAGGAATCAGCTGCGAGGAGCAAGGTGACATTATTACTTATTCCTTGGGAGTCAAACCCATGACCTTCATTTAATAATTGTTATGCTCTACCGTTTAAGCAGGTGGCAGGTCATGAAACCCCTCCATTTTCGATGATTAAAACACTGTGGTGCCATTAATCTCTTTAAATTTTCACAGACGGACAGTCCCAGGTATATGGTGGTAACTCTGGTGGGCAGCCATGTGTGTTCCCCTTTGTTTTTAGTGGAAACACCCACTACTCCTGCATCTCCGAGGGTCGATCTGATGGGCAGCTATGGTGCAGTACCACCTCTGATTATGACAGCGATGGCTTGTACTCATTCTGTACCCAGAAGAATCGTAAGTGCATCTCAGAGCCTCTTTTGACCAAGAAAATATCGTAACGGTAtaccaaaataaa

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0070527 platelet aggregation biological_process
GO:0001756 somitogenesis biological_process
GO:0003128 heart field specification biological_process
GO:0072378 blood coagulation, fibrin clot formation biological_process
GO:0003181 atrioventricular valve morphogenesis biological_process
GO:0007044 cell-substrate junction assembly biological_process
GO:0007399 nervous system development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0042060 wound healing biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005178 integrin binding molecular_function
GO:0043394 proteoglycan binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001531 lncRNA downstream 24676 5509804 ~ 5511662 (-) False XLOC_000965
TCONS_00001530 lncRNA downstream 26753 5506524 ~ 5509585 (-) False XLOC_000965
TCONS_00003315 lncRNA downstream 183896 5350872 ~ 5352442 (-) True XLOC_000962
TCONS_00003314 lncRNA downstream 339617 5195698 ~ 5196721 (-) True XLOC_000961
TCONS_00003313 lncRNA downstream 339729 5195078 ~ 5196609 (-) False XLOC_000961
TCONS_00003317 lncRNA upstream 471667 6014730 ~ 6024808 (-) False XLOC_000967
TCONS_00003318 lncRNA upstream 478453 6021516 ~ 6024808 (-) True XLOC_000967
TCONS_00003319 lncRNA upstream 516963 6060026 ~ 6085752 (-) False XLOC_000968
TCONS_00003320 lncRNA upstream 616568 6159631 ~ 6173701 (-) True XLOC_000969
TCONS_00003321 lncRNA upstream 677818 6220881 ~ 6225273 (-) False XLOC_000970
TCONS_00001526 mRNA downstream 80836 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA downstream 80840 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001525 mRNA downstream 141547 5363569 ~ 5394791 (-) True XLOC_000963
TCONS_00001524 mRNA downstream 141586 5354489 ~ 5394752 (-) False XLOC_000963
TCONS_00001512 mRNA downstream 2241293 3100244 ~ 3295045 (-) True XLOC_000951
TCONS_00001533 mRNA upstream 63397 5606460 ~ 5746030 (-) False XLOC_000966
TCONS_00001534 mRNA upstream 185287 5728350 ~ 5745420 (-) True XLOC_000966
TCONS_00001535 mRNA upstream 255485 5798548 ~ 6028876 (-) False XLOC_000967
TCONS_00001536 mRNA upstream 525373 6068436 ~ 6085750 (-) True XLOC_000968
TCONS_00001537 mRNA upstream 675569 6218632 ~ 6225285 (-) False XLOC_000970
TCONS_00001523 other downstream 457850 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 1325686 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001518 other downstream 2238089 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 2238250 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 2238402 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001538 other upstream 677818 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 910341 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 1598976 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 2031288 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 2089056 7632119 ~ 7650072 (-) False XLOC_000978

Expression Profile

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