Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU466521 |
| length | 2317 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 2 |
| gene id | G405992 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 5376267 ~ 5379015 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU466701 | lncRNA | upstream | 119055 | 5256739 ~ 5257212 (+) | True | G406134 |
| TU466657 | lncRNA | upstream | 419911 | 4956150 ~ 4956356 (+) | True | G406101 |
| TU466528 | lncRNA | upstream | 439819 | 4934315 ~ 4936448 (+) | True | G405999 |
| TU466523 | lncRNA | upstream | 442332 | 4818488 ~ 4933935 (+) | True | G405994 |
| TU466513 | lncRNA | downstream | 45574 | 5424589 ~ 5429645 (+) | False | G405987 |
| TU466514 | lncRNA | downstream | 45574 | 5424589 ~ 5428247 (+) | True | G405987 |
| TU466892 | lncRNA | downstream | 173627 | 5552642 ~ 5554868 (+) | True | G406315 |
| TU466941 | lncRNA | downstream | 255733 | 5634748 ~ 5639866 (+) | True | G406354 |
| TU466760 | lncRNA | downstream | 377762 | 5756777 ~ 5827969 (+) | True | G406189 |
| CI01000299_05331367_05364944.mRNA | mRNA | upstream | 11290 | 5331201 ~ 5364977 (+) | True | CI01000299_05331367_05364944 |
| CI01000299_05254419_05314859.mRNA | mRNA | upstream | 60024 | 5254419 ~ 5316243 (+) | True | CI01000299_05254419_05314859 |
| CI01000299_05128395_05192154.mRNA | mRNA | upstream | 183273 | 5128348 ~ 5192994 (+) | True | CI01000299_05128395_05192154 |
| CI01000299_04906697_04907091.mRNA | mRNA | upstream | 466194 | 4906697 ~ 4910073 (+) | False | CI01000299_04906697_04907091 |
| CI01000299_04892566_04900169.mRNA | mRNA | upstream | 475731 | 4890391 ~ 4900536 (+) | True | CI01000299_04892566_04900169 |
| CI01000299_05392812_05418070.mRNA | mRNA | downstream | 13677 | 5392692 ~ 5418352 (+) | True | CI01000299_05392812_05418070 |
| CI01000299_05619817_05725510.mRNA | mRNA | downstream | 240689 | 5619704 ~ 5727439 (+) | True | CI01000299_05619817_05725510 |
| CI01000299_05732790_05737401.mRNA | mRNA | downstream | 353775 | 5732790 ~ 5737802 (+) | True | CI01000299_05732790_05737401 |
| CI01000299_05778912_05790662.mRNA | mRNA | downstream | 399548 | 5778563 ~ 5790755 (+) | True | CI01000299_05778912_05790662 |
| CI01000299_05799020_05801977.mRNA | mRNA | downstream | 419927 | 5798942 ~ 5802114 (+) | True | CI01000299_05799020_05801977 |
| TU466818 | other | upstream | 2688 | 5371181 ~ 5373579 (+) | True | G406244 |
| TU466651 | other | upstream | 448423 | 4924462 ~ 4927844 (+) | True | G406096 |
| TU466374 | other | upstream | 671642 | 4702382 ~ 4702508 (+) | True | G405864 |
| TU466383 | other | upstream | 870350 | 4505404 ~ 4505917 (+) | True | G405866 |
| TU466350 | other | upstream | 1056126 | 4295533 ~ 4320141 (+) | True | G405842 |
| TU466732 | other | downstream | 858823 | 6237838 ~ 6300508 (+) | True | G406161 |
