RNA id: TU468426


Basic Information

Item Value
RNA id TU468426
length 1242
lncRNA type antisense_over
GC content 0.57
exon number 6
gene id G407669
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5413334 ~ 5418371 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCGTCAGTGCAAGTTTAATGCCAAGAGCAAATATCTCGTTCTGTTACATGCAGAGAATAAAGTTCATCTTGTACATGACATAATTCTCAGGCACGAGTAAATAATATTCCTCAACAGTGAATCTGACTAATACTGTTCAGAATTTGAACTACAAAGATGAACCTCAGCAGAAGCAGAAGGAATGAGTTTTTATGAACAATCTGGAATGATTGGATGTGGAATGTCAATGGAATTAATGTCTAAATGAAGGACTGAAACATGCGTTCATTAGTGTCATAGACGCCACCGGTCCGTTCGGATCTATCCCTGAACGCTCTGGCTCCACATGACCCGTCCGTCGTCTCTCAGCTTCACGGCGCCGCTGGCCACCAGCTCTAATGCCGCGGGGAAGGCGCGATGCTCCGCCTCCCGGATGCGCTCCGATAGGCTGTCTTCGGTGTCAGTCACCAGGATGGGAACCGCCTCCTGTACGACGATCGCTCCTGCGTCTACTTCCTCGGCCACGAAGTGTACGGTGCAGCCGGTGATGCGGACGGCGGCCTGAAGAGCCTGTTTCTGTGCGTTCACTCCTTTAAAGGCCGGCAGCAGCGACGGGTGGATGTTCAGCATCTTCCCGCTCCACTTCCTGACGAAGGGTCCCGTGAGGATTCGCATGAAACCCGCCAGACAAACCAGCTCCACCCTGAACTCCTCCAGGACTCGGTCTATGGTGCCGTCAAACTCGGCTCTGCTGCCGTACAGCTTATGATCCACGACCCGCGTCTGAATGCCCGCCATAGACGCTCTCTTCAGCCCCATGACGCCCGGTCTGTTGGAGATGACCACCACGATCTCCGCCGAACTCGAGGGTTTCTTGGCCTGCTCCATCAGGGCCTGCAGGTTTGTTCCGCTTCCAGAGATCAGAACGGCCACTTTGGTCCTCTTGCGTGTGGCGTGTTCCCCGTGAAGAGCTCCGTTCTCGAGGGCGCTGGTGTCCGGGGAGCGTCCGGGACTCTCTTTTAAACTCTGCTCCAGGTTTCTGATGACCACAGCCTCCGCTCCGGGGTGTTTGTGAGCGAGCGATCCCACGATCCACGCCTCCTCCTGGGCCCGCAGCAGCCGTACGACCCTCTGAGCGTCCTGTTTGCTGACCACCAGCACGGCGCCCAGACCGCAGTTAAAGGTGCGGCTCATCTCCTCCTCCGACAGGCCACCCTCCCGCTGCAGCCACGAGAACACGGGCGGGATCCTCCAGCGGGACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468329 lncRNA downstream 230972 5085394 ~ 5182362 (-) False G407591
TU468330 lncRNA downstream 302100 5085394 ~ 5111234 (-) True G407591
TU468298 lncRNA downstream 416425 4957987 ~ 4996909 (-) True G407565
TU468297 lncRNA downstream 456969 4956098 ~ 4956365 (-) True G407564
TU468295 lncRNA downstream 473395 4939691 ~ 4939939 (-) True G407562
TU468429 lncRNA upstream 38493 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468500 lncRNA upstream 134257 5552628 ~ 5554845 (-) True G407734
TU468538 lncRNA upstream 216469 5634840 ~ 5639866 (-) True G407764
TU468628 lncRNA upstream 355878 5774249 ~ 5775541 (-) True G407848
TU468580 lncRNA upstream 403204 5821575 ~ 5821591 (-) True G407801
CI01000299_05379545_05381902.mRNA mRNA downstream 31194 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
CI01000299_04913779_04927715.mRNA mRNA downstream 485619 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_04861862_04862244.mRNA mRNA downstream 550741 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04741460_04746667.mRNA mRNA downstream 666667 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_04708767_04714088.mRNA mRNA downstream 699246 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_05419449_05423414.mRNA mRNA upstream 1032 5419403 ~ 5423414 (-) True CI01000299_05419449_05423414
CI01000299_05428160_05443433.mRNA mRNA upstream 9290 5427661 ~ 5443433 (-) False CI01000299_05428160_05443433
CI01000299_05457285_05462908.mRNA mRNA upstream 38736 5457107 ~ 5463491 (-) False CI01000299_05457285_05462908
CI01000299_05466693_05471714.mRNA mRNA upstream 47271 5465642 ~ 5471987 (-) True CI01000299_05466693_05471714
CI01000299_05478688_05502027.mRNA mRNA upstream 59111 5477482 ~ 5503268 (-) True CI01000299_05478688_05502027
TU468235 other downstream 484516 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 862613 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1249010 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3395284 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 3532346 1855639 ~ 1880988 (-) True G404976
TU468421 other upstream 22966 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 400198 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 409465 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1113630 6532144 ~ 6534655 (-) True G407899

Expression Profile