RNA id: TU466735


Basic Information

Item Value
RNA id TU466735
length 477
lncRNA type antisense_over
GC content 0.57
exon number 6
gene id G406164
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5759224 ~ 5762316 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGCTTCGGCTATGAGAGGAGGAGTCACTGTGGAGGATGAGGGAATCTCCACTAGTCTTTCTGCTCTTTTCCGCAGCTTCCTCCACACTGTGTGATTAGCGGTCAGATTCACTGGCAGCGAGAGACCCTGAGCCCTGCGCCGGACGCCCAATGCGCTCTCTCCCACCGTATGGATGGACGTGACCTCATACTGCGAGCACAGACCCGTGCGGGACACTAGAGGGCCTCCGCTCAGCGTCACATGATCGCCACACCTGTATAACGACACCGTCCTATTCTGACTTTGAGCTGCTCTCTCTTCAACTTCCTCCTGTTTACACCTGCTGTGAGAGAAGATCTCCAGCGCCACAGACGGCGAAACGTCCAGCGGTTCCCACGGCAGATCTTTATGGACGAGCTGCAGCGCGTCACGGGTGAAACTGCGCAGGCTCTCCTCTGTGGGCGTCCAGGAGTCTAAACGAGAGTCCAGAACCAGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466774 lncRNA upstream 13798 5312168 ~ 5745426 (+) True G406203
TU466941 lncRNA upstream 119358 5634748 ~ 5639866 (+) True G406354
TU466892 lncRNA upstream 204356 5552642 ~ 5554868 (+) True G406315
TU466513 lncRNA upstream 329579 5424589 ~ 5429645 (+) False G405987
TU466514 lncRNA upstream 330977 5424589 ~ 5428247 (+) True G405987
TU466781 lncRNA downstream 67768 5830084 ~ 5831741 (+) True G406210
TU467011 lncRNA downstream 137341 5899657 ~ 5899988 (+) True G406417
TU466739 lncRNA downstream 165866 5928182 ~ 5929929 (+) True G406168
TU467021 lncRNA downstream 186382 5948698 ~ 5948928 (+) True G406427
TU466784 lncRNA downstream 251092 6013408 ~ 6015647 (+) True G406213
CI01000299_05732790_05737401.mRNA mRNA upstream 21422 5732790 ~ 5737802 (+) True CI01000299_05732790_05737401
CI01000299_05619817_05725510.mRNA mRNA upstream 31785 5619704 ~ 5727439 (+) True CI01000299_05619817_05725510
CI01000299_05392812_05418070.mRNA mRNA upstream 340872 5392692 ~ 5418352 (+) True CI01000299_05392812_05418070
CI01000299_05331367_05364944.mRNA mRNA upstream 394247 5331201 ~ 5364977 (+) True CI01000299_05331367_05364944
CI01000299_05254419_05314859.mRNA mRNA upstream 442981 5254419 ~ 5316243 (+) True CI01000299_05254419_05314859
CI01000299_05778912_05790662.mRNA mRNA downstream 16247 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
CI01000299_05799020_05801977.mRNA mRNA downstream 36626 5798942 ~ 5802114 (+) True CI01000299_05799020_05801977
CI01000299_05816534_05817445.mRNA mRNA downstream 54218 5816534 ~ 5817456 (+) True CI01000299_05816534_05817445
CI01000299_05836707_05843149.mRNA mRNA downstream 73985 5836301 ~ 5843594 (+) True CI01000299_05836707_05843149
CI01000299_05844429_05845510.mRNA mRNA downstream 81845 5844161 ~ 5845665 (+) True CI01000299_05844429_05845510
TU466818 other upstream 385645 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 831380 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1054599 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1253307 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1439083 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 475522 6237838 ~ 6300508 (+) True G406161

Expression Profile