RNA id: TU468639


Basic Information

Item Value
RNA id TU468639
length 299
lncRNA type intronic
GC content 0.43
exon number 2
gene id G407858
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5929639 ~ 5930546 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGACAGTGTGAGTGTGTTATTGACAGTGTGAGTGATTGACAGTGATTGACAGTGTGAGTGTGATTGACAGTGTGAGTGTGATTGACAGTGTGTTATTGACAGTGTGATTGACAGTGTGAGTGTGATTGACAGTGTGTGTGTGACTGACAGTGTGAGTGTGTGATTGACAGTGTGTTATTGACAGTGTGATTGACAGTGTGAGTGTGACTGACAGTGTTATTGACAGTGTGATTGACAGTGTGAGTGTGACTGACAGTGTTATTGACAGTGTGATTGACAGTGAGTGTGTGATTGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468580 lncRNA downstream 31168 5821575 ~ 5821591 (-) True G407801
TU468628 lncRNA downstream 154098 5774249 ~ 5775541 (-) True G407848
TU468538 lncRNA downstream 289773 5634840 ~ 5639866 (-) True G407764
TU468500 lncRNA downstream 374794 5552628 ~ 5554845 (-) True G407734
TU468429 lncRNA downstream 466467 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468606 lncRNA upstream 14829 5945375 ~ 5946025 (-) True G407827
TU468604 lncRNA upstream 33134 5963680 ~ 5969556 (-) True G407825
TU468662 lncRNA upstream 87996 6018542 ~ 6023664 (-) True G407881
TU468666 lncRNA upstream 94479 6025025 ~ 6025802 (-) True G407884
TU468667 lncRNA upstream 95569 6026115 ~ 6026325 (-) True G407885
CI01000299_05919510_05924061.mRNA mRNA downstream 5011 5919128 ~ 5924628 (-) False CI01000299_05919510_05924061
CI01000299_05896205_05898855.mRNA mRNA downstream 30782 5896043 ~ 5898857 (-) False CI01000299_05896205_05898855
CI01000299_05856747_05860959.mRNA mRNA downstream 66653 5856716 ~ 5862986 (-) True CI01000299_05856747_05860959
CI01000299_05849494_05852270.mRNA mRNA downstream 77133 5849402 ~ 5852506 (-) True CI01000299_05849494_05852270
CI01000299_05831615_05835696.mRNA mRNA downstream 93831 5831391 ~ 5835808 (-) False CI01000299_05831615_05835696
CI01000299_05946615_05949088.mRNA mRNA upstream 15787 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05974659_05985294.mRNA mRNA upstream 43845 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_06037407_06054548.mRNA mRNA upstream 105671 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_06130943_06144384.mRNA mRNA upstream 198527 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06145156_06154533.mRNA mRNA upstream 214409 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
TU468578 other downstream 5506 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 93650 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 473531 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1000821 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1378918 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 601455 6532144 ~ 6534655 (-) True G407899

Expression Profile