RNA id: TU468606


Basic Information

Item Value
RNA id TU468606
length 651
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G407827
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5945375 ~ 5946025 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTATTCTATACATTTATTCATTTAACAGACGCTGGAAAATTCTATACACACTAGAAGGCCATTAAAAACAACTAGAATATGTTTCTTAAAAGGTGGCATAACTTAAATACAACACGTATGTGGGCGTTTCCATTAAAAACACACCGTCATGAGGAGTTCTGTGATAAACTGAGTGTAAAATAAGAAGACGAGAAATAGAATTAAGCACTGCTGTCACAAAAATAAATGTGTGAAGATTACTCAGTTCTTCAGTTTACATTCCTCTCTGCTATTAGTTGTATCTTTATCTCTCATCATAACTATTTTAGCTCAGATTTGCATTCAGGGATGTTGAACACATGAGTTTCCTGACCTTCAGATGTTTGCCTTAATCAAGTTTCTCATTGTCCTTCAGCTGTTACCCAAAAATTAAAATTATCCCATGATTCACTCACCCTCAAACCATCCTGTGTATATGACTATCTTTCAGACGAACACAATCTGAGGTATATTAAAAATGTCCTGGCTCTTCTAAGTTTTATAATGGCAGTGAATGGGGGGATGAGATTTTGAAGCCCAAAAAAGTGCATCCATCCATCATAACAGTAATCCATATGACTCCAGGGAGTTTCCAGTAAATCTACGTGTTATCTTTCAATCTACATGTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468639 lncRNA downstream 14829 5929639 ~ 5930546 (-) True G407858
TU468580 lncRNA downstream 46904 5821575 ~ 5821591 (-) True G407801
TU468628 lncRNA downstream 169834 5774249 ~ 5775541 (-) True G407848
TU468538 lncRNA downstream 305509 5634840 ~ 5639866 (-) True G407764
TU468500 lncRNA downstream 390530 5552628 ~ 5554845 (-) True G407734
TU468604 lncRNA upstream 17655 5963680 ~ 5969556 (-) True G407825
TU468662 lncRNA upstream 72517 6018542 ~ 6023664 (-) True G407881
TU468666 lncRNA upstream 79000 6025025 ~ 6025802 (-) True G407884
TU468667 lncRNA upstream 80090 6026115 ~ 6026325 (-) True G407885
TU468589 lncRNA upstream 84251 6030276 ~ 6030985 (-) True G407810
CI01000299_05927821_05933216.mRNA mRNA downstream 10543 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_05919510_05924061.mRNA mRNA downstream 20747 5919128 ~ 5924628 (-) False CI01000299_05919510_05924061
CI01000299_05896205_05898855.mRNA mRNA downstream 46518 5896043 ~ 5898857 (-) False CI01000299_05896205_05898855
CI01000299_05856747_05860959.mRNA mRNA downstream 82389 5856716 ~ 5862986 (-) True CI01000299_05856747_05860959
CI01000299_05849494_05852270.mRNA mRNA downstream 92869 5849402 ~ 5852506 (-) True CI01000299_05849494_05852270
CI01000299_05946615_05949088.mRNA mRNA upstream 308 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05974659_05985294.mRNA mRNA upstream 28366 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_06037407_06054548.mRNA mRNA upstream 90192 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_06130943_06144384.mRNA mRNA upstream 183048 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06145156_06154533.mRNA mRNA upstream 198930 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
TU468578 other downstream 21242 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 109386 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 489267 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1016557 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1394654 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 585976 6532144 ~ 6534655 (-) True G407899

Expression Profile