RNA id: TU467021



Basic Information


Item Value
RNA id TU467021
length 231
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G406427
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5948698 ~ 5948928 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTCAGAGATCCGGTCTGATCCAGCTTCAGTCTGCCTCTGAATCTCCCATCAGCAACATCATCATAAAACGTGTCTTTATTGTTCTGCCTGTTGATTTGAGCTATGAGGATGTTCTTGTGTCCAAACTTCCACTCGATCTCTTTATTTCCCCCTATTTCAGTAAGATCAGGGTTTAGAGTGACTGATTTTCCCTCCAACACTGACACCGACTTCACTGCATCAACACCGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU466739 lncRNA upstream 18769 5928182 ~ 5929929 (+) True G406168
TU467011 lncRNA upstream 48710 5899657 ~ 5899988 (+) True G406417
TU466781 lncRNA upstream 116957 5830084 ~ 5831741 (+) True G406210
TU466760 lncRNA upstream 120729 5756777 ~ 5827969 (+) True G406189
TU466735 lncRNA upstream 186382 5759224 ~ 5762316 (+) True G406164
TU466784 lncRNA downstream 64480 6013408 ~ 6015647 (+) True G406213
TU466791 lncRNA downstream 76123 6025051 ~ 6025357 (+) True G406220
TU467052 lncRNA downstream 184915 6133843 ~ 6134043 (+) True G406458
TU467057 lncRNA downstream 186961 6135889 ~ 6136121 (+) True G406463
TU467055 lncRNA downstream 200671 6149599 ~ 6151122 (+) True G406461
CI01000299_05935373_05943285.mRNA mRNA upstream 5285 5934903 ~ 5943413 (+) True CI01000299_05935373_05943285
CI01000299_05925030_05926229.mRNA mRNA upstream 22401 5924670 ~ 5926297 (+) True CI01000299_05925030_05926229
CI01000299_05903841_05913302.mRNA mRNA upstream 33386 5901464 ~ 5915312 (+) True CI01000299_05903841_05913302
CI01000299_05864998_05873333.mRNA mRNA upstream 75183 5863634 ~ 5873515 (+) True CI01000299_05864998_05873333
CI01000299_05844429_05845510.mRNA mRNA upstream 103033 5844161 ~ 5845665 (+) True CI01000299_05844429_05845510
CI01000299_05955084_05970603.mRNA mRNA downstream 5288 5954216 ~ 5971417 (+) True CI01000299_05955084_05970603
CI01000299_05988564_06002758.mRNA mRNA downstream 39167 5988095 ~ 6003021 (+) True CI01000299_05988564_06002758
CI01000299_06018839_06023448.mRNA mRNA downstream 69911 6018839 ~ 6023510 (+) True CI01000299_06018839_06023448
CI01000299_06029307_06034445.mRNA mRNA downstream 80029 6028957 ~ 6034956 (+) True CI01000299_06029307_06034445
CI01000299_06074050_06097303.mRNA mRNA downstream 125122 6074050 ~ 6097533 (+) True CI01000299_06074050_06097303
TU466818 other upstream 575119 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1020854 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1244073 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1442781 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1628557 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 288910 6237838 ~ 6300508 (+) True G406161

Expression Profile