Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU466784 |
| length | 2240 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 1 |
| gene id | G406213 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 6013408 ~ 6015647 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU467021 | lncRNA | upstream | 64480 | 5948698 ~ 5948928 (+) | True | G406427 |
| TU466739 | lncRNA | upstream | 83479 | 5928182 ~ 5929929 (+) | True | G406168 |
| TU467011 | lncRNA | upstream | 113420 | 5899657 ~ 5899988 (+) | True | G406417 |
| TU466781 | lncRNA | upstream | 181667 | 5830084 ~ 5831741 (+) | True | G406210 |
| TU466760 | lncRNA | upstream | 185439 | 5756777 ~ 5827969 (+) | True | G406189 |
| TU466791 | lncRNA | downstream | 9404 | 6025051 ~ 6025357 (+) | True | G406220 |
| TU467052 | lncRNA | downstream | 118196 | 6133843 ~ 6134043 (+) | True | G406458 |
| TU467057 | lncRNA | downstream | 120242 | 6135889 ~ 6136121 (+) | True | G406463 |
| TU467055 | lncRNA | downstream | 133952 | 6149599 ~ 6151122 (+) | True | G406461 |
| TU467064 | lncRNA | downstream | 167547 | 6183194 ~ 6183531 (+) | True | G406470 |
| CI01000299_05988564_06002758.mRNA | mRNA | upstream | 10387 | 5988095 ~ 6003021 (+) | True | CI01000299_05988564_06002758 |
| CI01000299_05955084_05970603.mRNA | mRNA | upstream | 41991 | 5954216 ~ 5971417 (+) | True | CI01000299_05955084_05970603 |
| CI01000299_05935373_05943285.mRNA | mRNA | upstream | 69995 | 5934903 ~ 5943413 (+) | True | CI01000299_05935373_05943285 |
| CI01000299_05925030_05926229.mRNA | mRNA | upstream | 87111 | 5924670 ~ 5926297 (+) | True | CI01000299_05925030_05926229 |
| CI01000299_05903841_05913302.mRNA | mRNA | upstream | 98096 | 5901464 ~ 5915312 (+) | True | CI01000299_05903841_05913302 |
| CI01000299_06018839_06023448.mRNA | mRNA | downstream | 3192 | 6018839 ~ 6023510 (+) | True | CI01000299_06018839_06023448 |
| CI01000299_06029307_06034445.mRNA | mRNA | downstream | 13310 | 6028957 ~ 6034956 (+) | True | CI01000299_06029307_06034445 |
| CI01000299_06074050_06097303.mRNA | mRNA | downstream | 58403 | 6074050 ~ 6097533 (+) | True | CI01000299_06074050_06097303 |
| CI01000299_06100005_06114087.mRNA | mRNA | downstream | 84070 | 6099717 ~ 6114463 (+) | True | CI01000299_06100005_06114087 |
| CI01000299_06116505_06128180.mRNA | mRNA | downstream | 99991 | 6115638 ~ 6128450 (+) | True | CI01000299_06116505_06128180 |
| TU466818 | other | upstream | 639829 | 5371181 ~ 5373579 (+) | True | G406244 |
| TU466651 | other | upstream | 1085564 | 4924462 ~ 4927844 (+) | True | G406096 |
| TU466374 | other | upstream | 1308783 | 4702382 ~ 4702508 (+) | True | G405864 |
| TU466383 | other | upstream | 1507491 | 4505404 ~ 4505917 (+) | True | G405866 |
| TU466350 | other | upstream | 1693267 | 4295533 ~ 4320141 (+) | True | G405842 |
| TU466732 | other | downstream | 222191 | 6237838 ~ 6300508 (+) | True | G406161 |
