RNA id: TU466791


Basic Information

Item Value
RNA id TU466791
length 307
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G406220
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6025051 ~ 6025357 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATGTGAGGGGTGTATTCACTTCTGTGAGATACTGTATATATAATTTTAAATCATCCTATAGACTGTATCTGACACTTTAATGGTATATTTATGTTTTTAAAGTCAACATCAAATTAAGACGGACTCTATTTACTCTCTTAATTCACGTTCCTGGTCTTAAATGATTAATCAGTGACTAAAAAACAATGATTATGTCTTAATAATCTTTCAAAGTTCCTTCCTCCACCTCTAAAATAAAAACTCAAATGTGTATTAAGTTGTTATTTTAGGCTGTTGTTGTAGGAGATGCAGCTTTCCAAAATCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466784 lncRNA upstream 9404 6013408 ~ 6015647 (+) True G406213
TU467021 lncRNA upstream 76123 5948698 ~ 5948928 (+) True G406427
TU466739 lncRNA upstream 95122 5928182 ~ 5929929 (+) True G406168
TU467011 lncRNA upstream 125063 5899657 ~ 5899988 (+) True G406417
TU466781 lncRNA upstream 193310 5830084 ~ 5831741 (+) True G406210
TU467052 lncRNA downstream 108486 6133843 ~ 6134043 (+) True G406458
TU467057 lncRNA downstream 110532 6135889 ~ 6136121 (+) True G406463
TU467055 lncRNA downstream 124242 6149599 ~ 6151122 (+) True G406461
TU467064 lncRNA downstream 157837 6183194 ~ 6183531 (+) True G406470
TU466733 lncRNA downstream 164422 6189779 ~ 6197674 (+) True G406162
CI01000299_06018839_06023448.mRNA mRNA upstream 1541 6018839 ~ 6023510 (+) True CI01000299_06018839_06023448
CI01000299_05988564_06002758.mRNA mRNA upstream 22030 5988095 ~ 6003021 (+) True CI01000299_05988564_06002758
CI01000299_05955084_05970603.mRNA mRNA upstream 53634 5954216 ~ 5971417 (+) True CI01000299_05955084_05970603
CI01000299_05935373_05943285.mRNA mRNA upstream 81638 5934903 ~ 5943413 (+) True CI01000299_05935373_05943285
CI01000299_05925030_05926229.mRNA mRNA upstream 98754 5924670 ~ 5926297 (+) True CI01000299_05925030_05926229
CI01000299_06029307_06034445.mRNA mRNA downstream 3600 6028957 ~ 6034956 (+) True CI01000299_06029307_06034445
CI01000299_06074050_06097303.mRNA mRNA downstream 48693 6074050 ~ 6097533 (+) True CI01000299_06074050_06097303
CI01000299_06100005_06114087.mRNA mRNA downstream 74360 6099717 ~ 6114463 (+) True CI01000299_06100005_06114087
CI01000299_06116505_06128180.mRNA mRNA downstream 90281 6115638 ~ 6128450 (+) True CI01000299_06116505_06128180
CI01000299_06177821_06180061.mRNA mRNA downstream 152464 6177821 ~ 6180191 (+) True CI01000299_06177821_06180061
TU466818 other upstream 651472 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1097207 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1320426 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1519134 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1704910 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 212481 6237838 ~ 6300508 (+) True G406161

Expression Profile