RNA id: TU468589


Basic Information

Item Value
RNA id TU468589
length 710
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G407810
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6030276 ~ 6030985 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTTCTGCTCTACTAATGTTGAATCCATCTCAGAGCAGCCGTCGTTCTCTTCATCTCCACTGTCCTCAGTTTCAAGGTTTGTGTTGTCCTCCTCTTCTTCTTTGATACTGTTCACATTTCCATCCTCCAAATTTAATGTTTCCTCCTGTTTTTCCAAATCAGCATACCCTGGTTTCCTTTGCACATTTTTCTTTTCATATTCTTGCATCTGTTCTACTGTCAGTTTAATCTTTCCTTCAATAATCTCTTGCTTTGACTCTTTCTTGACCGCTTCATCTTGGTCCTCTCCTTTCCTCGCAACCCCTTTGGTCTCTTTTGACGTCGCTAGTCCACTTTCGTCTCTTGTGGTGGCAGAGTAAATTTTAACCTCTCCGTTGTCTGCCAGCAGGGTGGTATTGAACGTTTTTTTGAAGTTCTCCAAAAAAAATAGATCAGAATCGAAGCGGGTCTTGTTGGCCCATATGAGGGTTGTTCCGGGCTGGCAGAAGTGGCGCATGGTGACCAGTAATTCTGCTAGGAAGTCATGATGATAGACCACATCGGCTGCTAAAATGTAGTCGTATCTGTAGACTGAATGAGGGAAGGTCTTATCGAGTTCATAACCCCAAGAGAGCTCCGCCACCTGCGGGGTGTATCTGCAGCGGCCCCGTGTGTTTCTGGACAGGTTGCATCTCAGGTTCCCGAGGACCTCCGGCAGGTCTGTTGCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468667 lncRNA downstream 3951 6026115 ~ 6026325 (-) True G407885
TU468666 lncRNA downstream 4474 6025025 ~ 6025802 (-) True G407884
TU468662 lncRNA downstream 6612 6018542 ~ 6023664 (-) True G407881
TU468604 lncRNA downstream 60720 5963680 ~ 5969556 (-) True G407825
TU468606 lncRNA downstream 84251 5945375 ~ 5946025 (-) True G407827
TU468608 lncRNA upstream 56179 6087164 ~ 6088221 (-) True G407829
TU468762 lncRNA upstream 57517 6088502 ~ 6088726 (-) True G407967
TU468744 lncRNA upstream 60506 6091491 ~ 6091881 (-) True G407949
TU468704 lncRNA upstream 62306 6093291 ~ 6099458 (-) True G407909
TU468707 lncRNA upstream 68863 6099848 ~ 6107253 (-) True G407912
CI01000299_05974659_05985294.mRNA mRNA downstream 44670 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_05946615_05949088.mRNA mRNA downstream 81042 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05927821_05933216.mRNA mRNA downstream 95444 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_05919510_05924061.mRNA mRNA downstream 105648 5919128 ~ 5924628 (-) False CI01000299_05919510_05924061
CI01000299_05896205_05898855.mRNA mRNA downstream 131419 5896043 ~ 5898857 (-) False CI01000299_05896205_05898855
CI01000299_06037407_06054548.mRNA mRNA upstream 5232 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_06130943_06144384.mRNA mRNA upstream 98088 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06145156_06154533.mRNA mRNA upstream 113970 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
CI01000299_06185794_06195015.mRNA mRNA upstream 154503 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06197276_06199730.mRNA mRNA upstream 165621 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
TU468578 other downstream 106143 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 194287 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 574168 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1101458 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1479555 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 501016 6532144 ~ 6534655 (-) True G407899

Expression Profile