RNA id: TU468608


Basic Information

Item Value
RNA id TU468608
length 1058
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G407829
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6087164 ~ 6088221 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAATCTCACACGGTTTGTGGTCGGCGCAGATCTACACACAAACAACACGGTGAACGCAGCGCTCGTTAGTTATAACACAGGAGAGACTGAGAGGAGACTCACCTCATCAATGATGGGTTTGAGCGTGACCCGCAGGTAATGCATCCCCGCCAGCTTCATGGTCTCATCGATGCATTTCGATGTGAGCGAGTTTCCCCGGAATATAGTGTTGGGATCCCTGCGGAGACAGGAGGAAGGTGAGGAACGAGTCGAGACGCCTGAAGGCAGATGATGTGTGTTTTACTCACTGCGTGCGGTTGATCTCTGCGTGTGCGATGGCACTGAGGAAAGGCACGATCTTGCCGTAGTGCAGGAAGAGTCGCACCAGCGGTACGGCCGCCTCCTGCTTCTCACGGCACGCCTCGCCCAAGATGTGAGCCGCCGACGCCGAGACGGGCTGTAGAGAGAAGCATTGTGATTGATCAATAATGACAAATTATATTTATTTGCTTAATATTCAGTAACACTGCATTATCGATTTGACTGCACTGACACTATTAGACAAGAACAAAAACTGAATTGATCTGAAAAATGACACTATTGTGTTTTAGAGCAGCTTATAGCTGAATTCATGCTTAAAACAATCTGTCAGTGGAGTCAGAAACATAATCTTAATTATTTAAAGGGAAAACAAGATTATTTTTCTGACCCCATTGGCAGATATTTGTTTTGTTTTAAGCGTAAAGTCACTTAATTGTGTTATTGTATGTCATTTTGCTTCTCCAGTAAATGTATCTTGATTTAGATGCTTATATACTTAGATGTTTGTATTGGAAAGCAAGTCAGAAACACTGAGGAAGAGCATAATTTCATCTAGTCAGTCCAAACCCCCAGACACACCTTTGCCTTGACCTCACTGACCTCGACGTGCGCGGAGTGCAGCAGCAGGTCACGGAGCGGGTTATAATGCTCCGTGGGGAACACGTGGTCCTCCGTGTAAACGATGTTGAGCCGCAACGAGCCCAGCTCATCAGCCTTCACCGATTTATGGCCATTATCTCTGGGCTGCAGGAAGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468589 lncRNA downstream 56179 6030276 ~ 6030985 (-) True G407810
TU468667 lncRNA downstream 60839 6026115 ~ 6026325 (-) True G407885
TU468666 lncRNA downstream 61362 6025025 ~ 6025802 (-) True G407884
TU468662 lncRNA downstream 63500 6018542 ~ 6023664 (-) True G407881
TU468604 lncRNA downstream 117608 5963680 ~ 5969556 (-) True G407825
TU468762 lncRNA upstream 281 6088502 ~ 6088726 (-) True G407967
TU468744 lncRNA upstream 3270 6091491 ~ 6091881 (-) True G407949
TU468704 lncRNA upstream 5070 6093291 ~ 6099458 (-) True G407909
TU468707 lncRNA upstream 11627 6099848 ~ 6107253 (-) True G407912
TU468684 lncRNA upstream 20257 6108478 ~ 6114490 (-) True G407895
CI01000299_06037407_06054548.mRNA mRNA downstream 32616 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_05974659_05985294.mRNA mRNA downstream 101558 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_05946615_05949088.mRNA mRNA downstream 137930 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05927821_05933216.mRNA mRNA downstream 152332 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_05919510_05924061.mRNA mRNA downstream 162536 5919128 ~ 5924628 (-) False CI01000299_05919510_05924061
CI01000299_06130943_06144384.mRNA mRNA upstream 40852 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06145156_06154533.mRNA mRNA upstream 56734 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
CI01000299_06185794_06195015.mRNA mRNA upstream 97267 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06197276_06199730.mRNA mRNA upstream 108385 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
CI01000299_06208641_06214104.mRNA mRNA upstream 120391 6208612 ~ 6214104 (-) True CI01000299_06208641_06214104
TU468578 other downstream 163031 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 251175 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 631056 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1158346 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1536443 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 443780 6532144 ~ 6534655 (-) True G407899

Expression Profile