Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU468707 |
| length | 6777 |
| lncRNA type | antisense_over |
| GC content | 0.39 |
| exon number | 3 |
| gene id | G407912 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 6099848 ~ 6107253 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU468704 | lncRNA | downstream | 390 | 6093291 ~ 6099458 (-) | True | G407909 |
| TU468744 | lncRNA | downstream | 7967 | 6091491 ~ 6091881 (-) | True | G407949 |
| TU468762 | lncRNA | downstream | 11122 | 6088502 ~ 6088726 (-) | True | G407967 |
| TU468608 | lncRNA | downstream | 11627 | 6087164 ~ 6088221 (-) | True | G407829 |
| TU468589 | lncRNA | downstream | 68863 | 6030276 ~ 6030985 (-) | True | G407810 |
| TU468684 | lncRNA | upstream | 1225 | 6108478 ~ 6114490 (-) | True | G407895 |
| TU468766 | lncRNA | upstream | 38244 | 6145497 ~ 6145924 (-) | True | G407971 |
| TU468770 | lncRNA | upstream | 75882 | 6183135 ~ 6183501 (-) | False | G407975 |
| TU468771 | lncRNA | upstream | 75882 | 6183135 ~ 6183535 (-) | False | G407975 |
| TU468772 | lncRNA | upstream | 75938 | 6183191 ~ 6183501 (-) | False | G407975 |
| CI01000299_06037407_06054548.mRNA | mRNA | downstream | 45300 | 6036217 ~ 6054548 (-) | True | CI01000299_06037407_06054548 |
| CI01000299_05974659_05985294.mRNA | mRNA | downstream | 114242 | 5974391 ~ 5985606 (-) | True | CI01000299_05974659_05985294 |
| CI01000299_05946615_05949088.mRNA | mRNA | downstream | 150614 | 5946333 ~ 5949234 (-) | True | CI01000299_05946615_05949088 |
| CI01000299_05927821_05933216.mRNA | mRNA | downstream | 165016 | 5927314 ~ 5934832 (-) | True | CI01000299_05927821_05933216 |
| CI01000299_05919510_05924061.mRNA | mRNA | downstream | 175220 | 5919128 ~ 5924628 (-) | False | CI01000299_05919510_05924061 |
| CI01000299_06130943_06144384.mRNA | mRNA | upstream | 21820 | 6129073 ~ 6144868 (-) | True | CI01000299_06130943_06144384 |
| CI01000299_06145156_06154533.mRNA | mRNA | upstream | 37702 | 6144955 ~ 6154533 (-) | True | CI01000299_06145156_06154533 |
| CI01000299_06185794_06195015.mRNA | mRNA | upstream | 78235 | 6185488 ~ 6195015 (-) | True | CI01000299_06185794_06195015 |
| CI01000299_06197276_06199730.mRNA | mRNA | upstream | 89353 | 6196606 ~ 6199730 (-) | True | CI01000299_06197276_06199730 |
| CI01000299_06208641_06214104.mRNA | mRNA | upstream | 101359 | 6208612 ~ 6214104 (-) | True | CI01000299_06208641_06214104 |
| TU468578 | other | downstream | 175715 | 5923656 ~ 5924133 (-) | True | CI01000299_05919510_05924061 |
| TU468584 | other | downstream | 263859 | 5835889 ~ 5835989 (-) | True | G407805 |
| TU468421 | other | downstream | 643740 | 5455914 ~ 5456108 (-) | True | G407665 |
| TU468235 | other | downstream | 1171030 | 4925968 ~ 4928818 (-) | True | G407509 |
| TU468104 | other | downstream | 1549127 | 4475994 ~ 4550721 (-) | True | G407413 |
| TU468694 | other | upstream | 424748 | 6532144 ~ 6534655 (-) | True | G407899 |
