RNA id: TU468766


Basic Information

Item Value
RNA id TU468766
length 335
lncRNA type intronic
GC content 0.31
exon number 2
gene id G407971
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6145497 ~ 6145924 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTAATTTCAGCTTTAAAACGGCTCTACAGAAGATTATTCGGCTCAGTTCAATAATGGATAATGCTGCAAAGTTCATCGATTTATGAAAAATTCAATTCATCTCTAAAGACAGTAGTGTTATTCAGGTCAATTCAGTTCAATGTTATTCAACTGAATTAAACAGTATCAATGTTGCAAAACTCAATTATGAAATTCAATTCAGCTGTAAAGCAGCTCTACAGAAGACTAATTTATTATTCCGCTCAATTTATTCAATTCAGTTCAATTGCAGTCAATGCTGCAAAGTTCAATTCTGAAATTAAATTCATCTCTAAAGACTATAGTATTATTCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468684 lncRNA downstream 31007 6108478 ~ 6114490 (-) True G407895
TU468707 lncRNA downstream 38244 6099848 ~ 6107253 (-) True G407912
TU468704 lncRNA downstream 46039 6093291 ~ 6099458 (-) True G407909
TU468744 lncRNA downstream 53616 6091491 ~ 6091881 (-) True G407949
TU468762 lncRNA downstream 56771 6088502 ~ 6088726 (-) True G407967
TU468770 lncRNA upstream 37211 6183135 ~ 6183501 (-) False G407975
TU468771 lncRNA upstream 37211 6183135 ~ 6183535 (-) False G407975
TU468772 lncRNA upstream 37267 6183191 ~ 6183501 (-) False G407975
TU468773 lncRNA upstream 37267 6183191 ~ 6183535 (-) True G407975
TU468718 lncRNA upstream 74842 6220766 ~ 6222379 (-) True G407923
CI01000299_06130943_06144384.mRNA mRNA downstream 629 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06037407_06054548.mRNA mRNA downstream 90949 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_05974659_05985294.mRNA mRNA downstream 159891 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_05946615_05949088.mRNA mRNA downstream 196263 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05927821_05933216.mRNA mRNA downstream 210665 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_06185794_06195015.mRNA mRNA upstream 39564 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06197276_06199730.mRNA mRNA upstream 50682 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
CI01000299_06208641_06214104.mRNA mRNA upstream 62688 6208612 ~ 6214104 (-) True CI01000299_06208641_06214104
CI01000299_06242885_06246604.mRNA mRNA upstream 96072 6241996 ~ 6246604 (-) True CI01000299_06242885_06246604
CI01000299_06257032_06266210.mRNA mRNA upstream 109933 6255857 ~ 6266210 (-) True CI01000299_06257032_06266210
TU468578 other downstream 221364 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 309508 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 689389 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1216679 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1594776 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 386077 6532144 ~ 6534655 (-) True G407899

Expression Profile