RNA id: TU466733


Basic Information

Item Value
RNA id TU466733
length 780
lncRNA type read_through
GC content 0.35
exon number 3
gene id G406162
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6189779 ~ 6197674 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAAAATAAAATATGAAATAGAATTAAATTAAATAATTAAAATAAAAATCTAATATAAAATAGAATAAAATTAAATTAAATCAAATTAAAAATTAAATCAAATATAAAATGATAAAATTAAATTAACACTTTCTTGGCAAGCATTTTTTTTTTTTTTTTTTTTTATAAATCATTCATTCTGTTTAATTTCTATACATGAATAAGAAAAGTATATTTTCTTTAGTATTTGTTACATTGTACAAAAAGGGCTGGACGTTTGAGTTGTTGATTTCATGTTCTCAGAGCTGCGGTCATCAGAGCTCCACGTCCAAAATAAAAAGCTCCAATATCAAAAATAGCTGCCTATGAGAGCAAATCACAACAAAACAGGGTACAAAATTCAGCAAACAGTGATAAAAGTCCCCGTGTCACACCTCACACCGCAGGATTCTTCAACAGTAGCCCTGAAGATACAGCAGCAGCAGCACAAAGACGATCAATCGAGCTTATCTGCTCATAAGCTACTGAAGATAATAGACTGAGCTGAAGAATTATGGGAAGCATTTGAGGGAATCCTTACAGCAGGATCACAATATTGAGTTTCAAACAAGAACTGGGAAACAAAAGGAATCTGCATATGATGGCAGCGACGGCTGCTGCTGCGTTAACGTCACCGGTTCTTCAGAGCTCCAGAACCTAATCTTCATCATCATCATCAAAGTCCTCCTCATCATCATCTTCCTCTTCATCCTCCATGTAGGATGTGGGCGTCTCCTCCCTAGACCCGTTGGAGCTGGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467064 lncRNA upstream 6248 6183194 ~ 6183531 (+) True G406470
TU467055 lncRNA upstream 38657 6149599 ~ 6151122 (+) True G406461
TU467057 lncRNA upstream 53658 6135889 ~ 6136121 (+) True G406463
TU467052 lncRNA upstream 55736 6133843 ~ 6134043 (+) True G406458
TU466791 lncRNA upstream 164422 6025051 ~ 6025357 (+) True G406220
TU467072 lncRNA downstream 9160 6206834 ~ 6207044 (+) True G406478
TU466767 lncRNA downstream 68080 6265754 ~ 6266230 (+) True G406196
TU466709 lncRNA downstream 81745 6279419 ~ 6286426 (+) False G406142
TU466710 lncRNA downstream 81745 6279419 ~ 6286426 (+) True G406142
TU466743 lncRNA downstream 112734 6310408 ~ 6311699 (+) True G406172
CI01000299_06177821_06180061.mRNA mRNA upstream 9588 6177821 ~ 6180191 (+) True CI01000299_06177821_06180061
CI01000299_06116505_06128180.mRNA mRNA upstream 61329 6115638 ~ 6128450 (+) True CI01000299_06116505_06128180
CI01000299_06100005_06114087.mRNA mRNA upstream 75316 6099717 ~ 6114463 (+) True CI01000299_06100005_06114087
CI01000299_06074050_06097303.mRNA mRNA upstream 92246 6074050 ~ 6097533 (+) True CI01000299_06074050_06097303
CI01000299_06029307_06034445.mRNA mRNA upstream 154823 6028957 ~ 6034956 (+) True CI01000299_06029307_06034445
CI01000299_06217616_06220842.mRNA mRNA downstream 19942 6217616 ~ 6221071 (+) True CI01000299_06217616_06220842
CI01000299_06223295_06227054.mRNA mRNA downstream 25218 6222892 ~ 6227186 (+) True CI01000299_06223295_06227054
CI01000299_06233485_06239858.mRNA mRNA downstream 34898 6232572 ~ 6239902 (+) True CI01000299_06233485_06239858
CI01000299_06269853_06274289.mRNA mRNA downstream 71928 6269602 ~ 6274393 (+) True CI01000299_06269853_06274289
CI01000299_06312445_06318421.mRNA mRNA downstream 114366 6312040 ~ 6318421 (+) True CI01000299_06312445_06318421
TU466818 other upstream 816200 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1261935 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1485154 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1683862 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1869638 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 40164 6237838 ~ 6300508 (+) True G406161

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00002804 True 678 lncRNA 0.52 4 NC_007112.7 237391 ~ 241707 (+)