RNA id: TU468718



Basic Information


Item Value
RNA id TU468718
length 1532
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G407923
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6220766 ~ 6222379 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCAGAGTAACACTGATGTGATGAGCTGAACTGAAGCACATGTGATGAATGTCACACACGTACAGAGAAACTAAACAATAAAAACAGTGTTAAAAACTTTGACAGCATAGAAACTCGTCCAGACGAAGAGTGCAAACGCTGAGGTGTTCGTTTGCCGATTTAATATCACAGACGCCTGTAAACAAATCAAACAATGTGAACAAACAGGATCTTATCAGCGTTTGTTAGTGATTGAATGATGGCTCTTATTCTCATTATTTCATTCATGAGTCTCGATGGCCATATTCACTCAGAAACTCTTGAGAATGAAGTTCTCCAGCGATCGAATGATAATGACACTCCTCAGTTCAGATGCTTCATTTCTCGTCTTGTATGTTGAGATATTTCTACAGATATTCTGACTTCTGGTGATGTGAGCGGAACTCAAACAGTGAAAAAAACCTCAAAACCAAACACGTTTGACTGTCGACGTCACGTGACTAAATGAAGCTTATTTCCTTTTCCTCTAAGTGAAGTTCTGCACAGCTAAATTATGGAAGCTTGTTTCTGCCACGGAATAAAAAAAAAAAATTTAATTGCGACTAAAAATTCAGATTTATTTTTTCATCTTTTTTGCAGTTTGGAATTTAAATTTACAAGTGCTAGTTATAATCGCCAAAGCGACAAAAGTCAGAATTATGAGAAAAATGTCAGAATTGTGAGGAAAGTCAGAATTACAAGAAATAAACTTGCAATTCTGAGAAAAATGTCAGAATTTGCAATAAAAAGTAAAAATTCTGAGAACTAGTCAGAATTGTGAGAAAAAAAATCAGAATTGTGAGGAAAAAGTAAGAATCTGCGACAAAAAAACGTACAATTTCAAGAAAATAGTCGGAATTCTGAGAAATAAATTTGCAATTCTGAGAAAAAAAGTCAGAATTCCGAGAAATAAACTTGAAATTCCGAGAAAAAAGTCAGAATTGTGAGAAATAAACTTGCAATTCTGAGAAAATGTCAGAATTTGCAATAAAAAGTCAAAATTGTAAGGAAAAAAGTCAGAATTCTGGGAAATAAACTTGCAATTCTGAGAAAAGTCAGAATTGTCAGAAAAGTCAGAATCTGCGACAAAAAAACCTACAATTCCAAGAGAATAGTCAGAATTCCGAGAAATAAACTCGCAATTGCGAGAAAAAAATTCACATTTATGTATTTTTGTATTCTGTGGTGGAAACAAGCTTCCTTACTTAATACTCCGTATAAATGACTAAACAAGCAGACATGCATGTATATGATGGCCATCATGAGACTGTTGACTGATGGGAAAACACTCGTGTCCAGACAGATCTCAGGTGTTCATCAGTGCAGTGTCAAAGCTCTCTCTGCAGTTAAAGATGAATATATATTTTTAAATTCTTTTATTGTTGTTTTTTATTTAAAAAGTCAGTCTGGAGAGGCTCGTCCTCCCTGTCAGCGCTCATTATAGAGTCTTGTGATTTTCTGCCGTCACGATCGGCCGGGCGAACTCCACAAAGTCATCGATGAGCACCGGCCACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU468771 lncRNA downstream 37231 6183135 ~ 6183535 (-) False G407975
TU468773 lncRNA downstream 37231 6183191 ~ 6183535 (-) True G407975
TU468770 lncRNA downstream 37265 6183135 ~ 6183501 (-) False G407975
TU468772 lncRNA downstream 37265 6183191 ~ 6183501 (-) False G407975
TU468766 lncRNA downstream 74842 6145497 ~ 6145924 (-) True G407971
TU468734 lncRNA upstream 4033 6226412 ~ 6232275 (-) True G407939
TU468784 lncRNA upstream 166997 6389376 ~ 6389644 (-) True G407986
TU468722 lncRNA upstream 169665 6392044 ~ 6392356 (-) True G407927
TU468799 lncRNA upstream 194747 6417126 ~ 6432767 (-) True G408001
TU468808 lncRNA upstream 217142 6439521 ~ 6439736 (-) True G408009
CI01000299_06208641_06214104.mRNA mRNA downstream 6662 6208612 ~ 6214104 (-) True CI01000299_06208641_06214104
CI01000299_06197276_06199730.mRNA mRNA downstream 21036 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
CI01000299_06185794_06195015.mRNA mRNA downstream 25751 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06145156_06154533.mRNA mRNA downstream 66233 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
CI01000299_06130943_06144384.mRNA mRNA downstream 75898 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06242885_06246604.mRNA mRNA upstream 19617 6241996 ~ 6246604 (-) True CI01000299_06242885_06246604
CI01000299_06257032_06266210.mRNA mRNA upstream 33478 6255857 ~ 6266210 (-) True CI01000299_06257032_06266210
CI01000299_06268189_06268676.mRNA mRNA upstream 45810 6268189 ~ 6269395 (-) True CI01000299_06268189_06268676
CI01000299_06274590_06278765.mRNA mRNA upstream 52048 6274427 ~ 6279132 (-) True CI01000299_06274590_06278765
CI01000299_06281861_06289368.mRNA mRNA upstream 57004 6279383 ~ 6290025 (-) True CI01000299_06281861_06289368
TU468578 other downstream 296633 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 384777 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 764658 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1291948 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1670045 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 309622 6532144 ~ 6534655 (-) True G407899

Expression Profile