Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU468734 |
| length | 4937 |
| lncRNA type | antisense_over |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G407939 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 6226412 ~ 6232275 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU468718 | lncRNA | downstream | 4033 | 6220766 ~ 6222379 (-) | True | G407923 |
| TU468771 | lncRNA | downstream | 42877 | 6183135 ~ 6183535 (-) | False | G407975 |
| TU468773 | lncRNA | downstream | 42877 | 6183191 ~ 6183535 (-) | True | G407975 |
| TU468770 | lncRNA | downstream | 42911 | 6183135 ~ 6183501 (-) | False | G407975 |
| TU468772 | lncRNA | downstream | 42911 | 6183191 ~ 6183501 (-) | False | G407975 |
| TU468784 | lncRNA | upstream | 157101 | 6389376 ~ 6389644 (-) | True | G407986 |
| TU468722 | lncRNA | upstream | 159769 | 6392044 ~ 6392356 (-) | True | G407927 |
| TU468799 | lncRNA | upstream | 184851 | 6417126 ~ 6432767 (-) | True | G408001 |
| TU468808 | lncRNA | upstream | 207246 | 6439521 ~ 6439736 (-) | True | G408009 |
| TU468809 | lncRNA | upstream | 207972 | 6440247 ~ 6440470 (-) | True | G408010 |
| CI01000299_06208641_06214104.mRNA | mRNA | downstream | 12308 | 6208612 ~ 6214104 (-) | True | CI01000299_06208641_06214104 |
| CI01000299_06197276_06199730.mRNA | mRNA | downstream | 26682 | 6196606 ~ 6199730 (-) | True | CI01000299_06197276_06199730 |
| CI01000299_06185794_06195015.mRNA | mRNA | downstream | 31397 | 6185488 ~ 6195015 (-) | True | CI01000299_06185794_06195015 |
| CI01000299_06145156_06154533.mRNA | mRNA | downstream | 71879 | 6144955 ~ 6154533 (-) | True | CI01000299_06145156_06154533 |
| CI01000299_06130943_06144384.mRNA | mRNA | downstream | 81544 | 6129073 ~ 6144868 (-) | True | CI01000299_06130943_06144384 |
| CI01000299_06242885_06246604.mRNA | mRNA | upstream | 9721 | 6241996 ~ 6246604 (-) | True | CI01000299_06242885_06246604 |
| CI01000299_06257032_06266210.mRNA | mRNA | upstream | 23582 | 6255857 ~ 6266210 (-) | True | CI01000299_06257032_06266210 |
| CI01000299_06268189_06268676.mRNA | mRNA | upstream | 35914 | 6268189 ~ 6269395 (-) | True | CI01000299_06268189_06268676 |
| CI01000299_06274590_06278765.mRNA | mRNA | upstream | 42152 | 6274427 ~ 6279132 (-) | True | CI01000299_06274590_06278765 |
| CI01000299_06281861_06289368.mRNA | mRNA | upstream | 47108 | 6279383 ~ 6290025 (-) | True | CI01000299_06281861_06289368 |
| TU468578 | other | downstream | 302279 | 5923656 ~ 5924133 (-) | True | CI01000299_05919510_05924061 |
| TU468584 | other | downstream | 390423 | 5835889 ~ 5835989 (-) | True | G407805 |
| TU468421 | other | downstream | 770304 | 5455914 ~ 5456108 (-) | True | G407665 |
| TU468235 | other | downstream | 1297594 | 4925968 ~ 4928818 (-) | True | G407509 |
| TU468104 | other | downstream | 1675691 | 4475994 ~ 4550721 (-) | True | G407413 |
| TU468694 | other | upstream | 299726 | 6532144 ~ 6534655 (-) | True | G407899 |
