Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU466743 |
| length | 972 |
| lncRNA type | antisense_over |
| GC content | 0.42 |
| exon number | 3 |
| gene id | G406172 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 6310408 ~ 6311699 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU466709 | lncRNA | upstream | 23982 | 6279419 ~ 6286426 (+) | False | G406142 |
| TU466710 | lncRNA | upstream | 23982 | 6279419 ~ 6286426 (+) | True | G406142 |
| TU466767 | lncRNA | upstream | 44178 | 6265754 ~ 6266230 (+) | True | G406196 |
| TU467072 | lncRNA | upstream | 103364 | 6206834 ~ 6207044 (+) | True | G406478 |
| TU466733 | lncRNA | upstream | 112734 | 6189779 ~ 6197674 (+) | True | G406162 |
| TU467074 | lncRNA | downstream | 11486 | 6323185 ~ 6323623 (+) | True | G406480 |
| TU467088 | lncRNA | downstream | 80381 | 6392080 ~ 6392356 (+) | False | G406494 |
| TU467090 | lncRNA | downstream | 80449 | 6392148 ~ 6392356 (+) | True | G406494 |
| TU467131 | lncRNA | downstream | 229563 | 6546125 ~ 6546203 (+) | True | G406532 |
| TU467132 | lncRNA | downstream | 229563 | 6541262 ~ 6541985 (+) | False | CI01000299_06541306_06541820 |
| CI01000299_06269853_06274289.mRNA | mRNA | upstream | 36015 | 6269602 ~ 6274393 (+) | True | CI01000299_06269853_06274289 |
| CI01000299_06233485_06239858.mRNA | mRNA | upstream | 70506 | 6232572 ~ 6239902 (+) | True | CI01000299_06233485_06239858 |
| CI01000299_06223295_06227054.mRNA | mRNA | upstream | 83222 | 6222892 ~ 6227186 (+) | True | CI01000299_06223295_06227054 |
| CI01000299_06217616_06220842.mRNA | mRNA | upstream | 89337 | 6217616 ~ 6221071 (+) | True | CI01000299_06217616_06220842 |
| CI01000299_06177821_06180061.mRNA | mRNA | upstream | 130217 | 6177821 ~ 6180191 (+) | True | CI01000299_06177821_06180061 |
| CI01000299_06312445_06318421.mRNA | mRNA | downstream | 341 | 6312040 ~ 6318421 (+) | True | CI01000299_06312445_06318421 |
| CI01000299_06322253_06326504.mRNA | mRNA | downstream | 10554 | 6322253 ~ 6326562 (+) | True | CI01000299_06322253_06326504 |
| CI01000299_06396938_06400105.mRNA | mRNA | downstream | 85239 | 6396938 ~ 6401342 (+) | True | CI01000299_06396938_06400105 |
| CI01000299_06416707_06422267.mRNA | mRNA | downstream | 105008 | 6416707 ~ 6422648 (+) | True | CI01000299_06416707_06422267 |
| CI01000299_06424909_06425694.mRNA | mRNA | downstream | 113112 | 6424811 ~ 6425733 (+) | True | CI01000299_06424909_06425694 |
| TU466732 | other | upstream | 9900 | 6237838 ~ 6300508 (+) | True | G406161 |
| TU466818 | other | upstream | 936829 | 5371181 ~ 5373579 (+) | True | G406244 |
| TU466651 | other | upstream | 1382564 | 4924462 ~ 4927844 (+) | True | G406096 |
| TU466374 | other | upstream | 1605783 | 4702382 ~ 4702508 (+) | True | G405864 |
| TU466383 | other | upstream | 1804491 | 4505404 ~ 4505917 (+) | True | G405866 |
