RNA id: TU467074


Basic Information

Item Value
RNA id TU467074
length 344
lncRNA type intronic
GC content 0.30
exon number 2
gene id G406480
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6323185 ~ 6323623 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGTTTTGACATTTTTATTAGTTTTTTAGGTAATTTTCTTGTATGTTTTGACATTTTTATTAGTTTTTTTTAGTAATTTTCTTGTATGTTTTGACATTTTTATTATTTTTTTAGTAATTTTCTTGTATGTTTTGACATTTTTATTAGTTTTTGACATTTTTTTAGTTTTTGAGTGTTTTTAAAGAAATGTGTCTCCTGTGGTCTGAATGAAGGCTGTTATGGCATTAGAGAGCGTGAAGCCCTGACCCTGACAGTGCCTGAAAACACTGGTTTTACCCGCAGAGTCTCACATTAAACTGCAAAGAATGATGGGAAATAGTCTTAAACGTGAACTTGACCTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466743 lncRNA upstream 11486 6310408 ~ 6311699 (+) True G406172
TU466709 lncRNA upstream 36759 6279419 ~ 6286426 (+) False G406142
TU466710 lncRNA upstream 36759 6279419 ~ 6286426 (+) True G406142
TU466767 lncRNA upstream 56955 6265754 ~ 6266230 (+) True G406196
TU467072 lncRNA upstream 116141 6206834 ~ 6207044 (+) True G406478
TU467088 lncRNA downstream 68457 6392080 ~ 6392356 (+) False G406494
TU467090 lncRNA downstream 68525 6392148 ~ 6392356 (+) True G406494
TU467131 lncRNA downstream 217639 6546125 ~ 6546203 (+) True G406532
TU467132 lncRNA downstream 217639 6541262 ~ 6541985 (+) False CI01000299_06541306_06541820
TU467133 lncRNA downstream 217639 6546082 ~ 6546203 (+) True G406532
CI01000299_06312445_06318421.mRNA mRNA upstream 4764 6312040 ~ 6318421 (+) True CI01000299_06312445_06318421
CI01000299_06269853_06274289.mRNA mRNA upstream 48792 6269602 ~ 6274393 (+) True CI01000299_06269853_06274289
CI01000299_06233485_06239858.mRNA mRNA upstream 83283 6232572 ~ 6239902 (+) True CI01000299_06233485_06239858
CI01000299_06223295_06227054.mRNA mRNA upstream 95999 6222892 ~ 6227186 (+) True CI01000299_06223295_06227054
CI01000299_06217616_06220842.mRNA mRNA upstream 102114 6217616 ~ 6221071 (+) True CI01000299_06217616_06220842
CI01000299_06396938_06400105.mRNA mRNA downstream 73315 6396938 ~ 6401342 (+) True CI01000299_06396938_06400105
CI01000299_06416707_06422267.mRNA mRNA downstream 93084 6416707 ~ 6422648 (+) True CI01000299_06416707_06422267
CI01000299_06424909_06425694.mRNA mRNA downstream 101188 6424811 ~ 6425733 (+) True CI01000299_06424909_06425694
CI01000299_06430810_06434834.mRNA mRNA downstream 104428 6428051 ~ 6435178 (+) True CI01000299_06430810_06434834
CI01000299_06439603_06455258.mRNA mRNA downstream 115980 6439603 ~ 6455462 (+) True CI01000299_06439603_06455258
TU466732 other upstream 22677 6237838 ~ 6300508 (+) True G406161
TU466818 other upstream 949606 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1395341 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1618560 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1817268 4505404 ~ 4505917 (+) True G405866

Expression Profile