RNA id: TU468812


Basic Information

Item Value
RNA id TU468812
length 304
lncRNA type intronic
GC content 0.40
exon number 1
gene id G408013
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6442473 ~ 6442776 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATGAGTGATTTGTCTTTTGTTGTTTGATTAACATTAAAAACACATTCAGACAGCAGGAATGCAAGGGCTGCTGTCTCTTTAAGGCATAATACACGGATCAGTACACTGATACTGAACACATGCGTTCTCTATCGAGTGTATAAGTTCACTTAAGACATAACCGACCATGCTTGCTAGGATACTCGCAAAGATGGGCAAGTTGACATAATTTTGTGTGAATTTGTCTGTTCAAGCACAAGACTTGAAAGAGACCTCAATATTTGCGCGCTGTACACACGCTTCCGATGAGTGCACAAATCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468810 lncRNA downstream 842 6441341 ~ 6441631 (-) True G408011
TU468809 lncRNA downstream 2003 6440247 ~ 6440470 (-) True G408010
TU468808 lncRNA downstream 2737 6439521 ~ 6439736 (-) True G408009
TU468799 lncRNA downstream 9706 6417126 ~ 6432767 (-) True G408001
TU468722 lncRNA downstream 50117 6392044 ~ 6392356 (-) True G407927
TU468743 lncRNA upstream 7886 6450662 ~ 6451378 (-) True G407948
TU468741 lncRNA upstream 10019 6452795 ~ 6453660 (-) True G407946
TU468717 lncRNA upstream 11317 6454093 ~ 6457229 (-) True G407922
TU468732 lncRNA upstream 16003 6458779 ~ 6459120 (-) True G407937
TU468719 lncRNA upstream 19681 6462457 ~ 6465185 (-) True G407924
CI01000299_06362136_06376918.mRNA mRNA downstream 65238 6362004 ~ 6377235 (-) True CI01000299_06362136_06376918
CI01000299_06352251_06359190.mRNA mRNA downstream 82270 6351435 ~ 6360203 (-) True CI01000299_06352251_06359190
CI01000299_06337727_06341840.mRNA mRNA downstream 100633 6337139 ~ 6341840 (-) True CI01000299_06337727_06341840
CI01000299_06320613_06321046.mRNA mRNA downstream 121427 6320564 ~ 6321046 (-) True CI01000299_06320613_06321046
CI01000299_06310939_06311125.mRNA mRNA downstream 131244 6310939 ~ 6311229 (-) True CI01000299_06310939_06311125
CI01000299_06476844_06477950.mRNA mRNA upstream 33207 6475983 ~ 6479549 (-) True CI01000299_06476844_06477950
CI01000299_06497414_06502931.mRNA mRNA upstream 54380 6497156 ~ 6502931 (-) True CI01000299_06497414_06502931
CI01000299_06505676_06510021.mRNA mRNA upstream 62781 6505557 ~ 6510144 (-) True CI01000299_06505676_06510021
CI01000299_06516832_06521405.mRNA mRNA upstream 73819 6516595 ~ 6521405 (-) True CI01000299_06516832_06521405
CI01000299_06522084_06525262.mRNA mRNA upstream 79192 6521968 ~ 6525262 (-) True CI01000299_06522084_06525262
TU468578 other downstream 518340 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 606484 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 986365 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1513655 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1891752 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 89225 6532144 ~ 6534655 (-) True G407899

Expression Profile