Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU468717 |
| length | 3137 |
| lncRNA type | antisense_over |
| GC content | 0.43 |
| exon number | 1 |
| gene id | G407922 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 6454093 ~ 6457229 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU468741 | lncRNA | downstream | 433 | 6452795 ~ 6453660 (-) | True | G407946 |
| TU468743 | lncRNA | downstream | 2715 | 6450662 ~ 6451378 (-) | True | G407948 |
| TU468812 | lncRNA | downstream | 11317 | 6442473 ~ 6442776 (-) | True | G408013 |
| TU468810 | lncRNA | downstream | 12462 | 6441341 ~ 6441631 (-) | True | G408011 |
| TU468809 | lncRNA | downstream | 13623 | 6440247 ~ 6440470 (-) | True | G408010 |
| TU468732 | lncRNA | upstream | 1550 | 6458779 ~ 6459120 (-) | True | G407937 |
| TU468719 | lncRNA | upstream | 5228 | 6462457 ~ 6465185 (-) | True | G407924 |
| TU468820 | lncRNA | upstream | 32208 | 6489437 ~ 6489704 (-) | True | G408021 |
| TU468821 | lncRNA | upstream | 33958 | 6491187 ~ 6491512 (-) | True | G408022 |
| TU468822 | lncRNA | upstream | 34528 | 6491757 ~ 6492018 (-) | True | G408023 |
| CI01000299_06362136_06376918.mRNA | mRNA | downstream | 76858 | 6362004 ~ 6377235 (-) | True | CI01000299_06362136_06376918 |
| CI01000299_06352251_06359190.mRNA | mRNA | downstream | 93890 | 6351435 ~ 6360203 (-) | True | CI01000299_06352251_06359190 |
| CI01000299_06337727_06341840.mRNA | mRNA | downstream | 112253 | 6337139 ~ 6341840 (-) | True | CI01000299_06337727_06341840 |
| CI01000299_06320613_06321046.mRNA | mRNA | downstream | 133047 | 6320564 ~ 6321046 (-) | True | CI01000299_06320613_06321046 |
| CI01000299_06310939_06311125.mRNA | mRNA | downstream | 142864 | 6310939 ~ 6311229 (-) | True | CI01000299_06310939_06311125 |
| CI01000299_06476844_06477950.mRNA | mRNA | upstream | 18754 | 6475983 ~ 6479549 (-) | True | CI01000299_06476844_06477950 |
| CI01000299_06497414_06502931.mRNA | mRNA | upstream | 39927 | 6497156 ~ 6502931 (-) | True | CI01000299_06497414_06502931 |
| CI01000299_06505676_06510021.mRNA | mRNA | upstream | 48328 | 6505557 ~ 6510144 (-) | True | CI01000299_06505676_06510021 |
| CI01000299_06516832_06521405.mRNA | mRNA | upstream | 59366 | 6516595 ~ 6521405 (-) | True | CI01000299_06516832_06521405 |
| CI01000299_06522084_06525262.mRNA | mRNA | upstream | 64739 | 6521968 ~ 6525262 (-) | True | CI01000299_06522084_06525262 |
| TU468578 | other | downstream | 529960 | 5923656 ~ 5924133 (-) | True | CI01000299_05919510_05924061 |
| TU468584 | other | downstream | 618104 | 5835889 ~ 5835989 (-) | True | G407805 |
| TU468421 | other | downstream | 997985 | 5455914 ~ 5456108 (-) | True | G407665 |
| TU468235 | other | downstream | 1525275 | 4925968 ~ 4928818 (-) | True | G407509 |
| TU468104 | other | downstream | 1903372 | 4475994 ~ 4550721 (-) | True | G407413 |
| TU468694 | other | upstream | 74772 | 6532144 ~ 6534655 (-) | True | G407899 |
