RNA id: TU468822


Basic Information

Item Value
RNA id TU468822
length 262
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G408023
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6491757 ~ 6492018 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACGAGTCTTGACCCAAGATCGGATTTTTTGTTGTTGTTGTTGTTGCGTGAGTAATTGAATGTGTGGCGTGAGTGCGTGTGAAAACAGGCAAACCCGTGTGTCACAGCGAAAGCGTGAGAGTTGGCAGCTCTGTCAACAAGACAAAATGACTAAATTTATAAAATATTCCCCATTCAAAAACGTACATACCCTTGAATCTTAACTGTCCTGTCATTAACTGTATGATCCACGACCGGTTTCATGTTTTGCGATAGTTGTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468821 lncRNA downstream 245 6491187 ~ 6491512 (-) True G408022
TU468820 lncRNA downstream 2053 6489437 ~ 6489704 (-) True G408021
TU468719 lncRNA downstream 26572 6462457 ~ 6465185 (-) True G407924
TU468732 lncRNA downstream 32637 6458779 ~ 6459120 (-) True G407937
TU468717 lncRNA downstream 34528 6454093 ~ 6457229 (-) True G407922
TU468829 lncRNA upstream 49267 6541285 ~ 6546201 (-) True G408028
CI01000299_06476844_06477950.mRNA mRNA downstream 12208 6475983 ~ 6479549 (-) True CI01000299_06476844_06477950
CI01000299_06362136_06376918.mRNA mRNA downstream 114522 6362004 ~ 6377235 (-) True CI01000299_06362136_06376918
CI01000299_06352251_06359190.mRNA mRNA downstream 131554 6351435 ~ 6360203 (-) True CI01000299_06352251_06359190
CI01000299_06337727_06341840.mRNA mRNA downstream 149917 6337139 ~ 6341840 (-) True CI01000299_06337727_06341840
CI01000299_06320613_06321046.mRNA mRNA downstream 170711 6320564 ~ 6321046 (-) True CI01000299_06320613_06321046
CI01000299_06497414_06502931.mRNA mRNA upstream 5138 6497156 ~ 6502931 (-) True CI01000299_06497414_06502931
CI01000299_06505676_06510021.mRNA mRNA upstream 13539 6505557 ~ 6510144 (-) True CI01000299_06505676_06510021
CI01000299_06516832_06521405.mRNA mRNA upstream 24577 6516595 ~ 6521405 (-) True CI01000299_06516832_06521405
CI01000299_06522084_06525262.mRNA mRNA upstream 29950 6521968 ~ 6525262 (-) True CI01000299_06522084_06525262
CI01000299_06526127_06532048.mRNA mRNA upstream 34109 6526127 ~ 6532048 (-) False CI01000299_06526127_06532048
TU468578 other downstream 567624 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 655768 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 1035649 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1562939 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1941036 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 39983 6532144 ~ 6534655 (-) True G407899

Expression Profile