RNA id: TU468829


Basic Information

Item Value
RNA id TU468829
length 461
lncRNA type antisense_over
GC content 0.38
exon number 4
gene id G408028
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6541285 ~ 6546201 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATTTTGCCTATATTTATTTTACTTTAAAAGTGCATCAACATAATCAAAATCAAACAATAACCATATGAAATTGATGTAAAAGAAATCTACATTTTAAAGACTACAATGGAAATAACAACAACAAAATTAAAAACATGAAGCACATCTGTCTGATTTTCCACGGTTTCTTCTGGTTTAAAGCCCTTGTAATTTGCTGTCCTCCACTGTTCTGTTGGACGGATAATAAACTTTAAAGGAGAATCCACTTTTTGGAAAAGAACCCGGGTTGATGCACAGGCAGTCTGTGTTGGATATGTTGAAGGGGTCGTATTTGTCAGCGAAGACAATGACATCAGGCACAGGATAAACGCGTAAGGCGTAATCATACGCCCAGTACACTGGACACACGTAGAGCGGGAGCGGCGTCAGGTGACCTTGTGACAGGATGGTTTTCACAAACTGTTGAACAAATGCAAAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468822 lncRNA downstream 49267 6491757 ~ 6492018 (-) True G408023
TU468821 lncRNA downstream 49773 6491187 ~ 6491512 (-) True G408022
TU468820 lncRNA downstream 51581 6489437 ~ 6489704 (-) True G408021
TU468719 lncRNA downstream 76100 6462457 ~ 6465185 (-) True G407924
TU468732 lncRNA downstream 82165 6458779 ~ 6459120 (-) True G407937
CI01000299_06526127_06532048.mRNA mRNA downstream 9237 6526127 ~ 6532048 (-) False CI01000299_06526127_06532048
CI01000299_06522084_06525262.mRNA mRNA downstream 16023 6521968 ~ 6525262 (-) True CI01000299_06522084_06525262
CI01000299_06516832_06521405.mRNA mRNA downstream 19880 6516595 ~ 6521405 (-) True CI01000299_06516832_06521405
CI01000299_06505676_06510021.mRNA mRNA downstream 31141 6505557 ~ 6510144 (-) True CI01000299_06505676_06510021
CI01000299_06497414_06502931.mRNA mRNA downstream 38354 6497156 ~ 6502931 (-) True CI01000299_06497414_06502931
TU468694 other downstream 6630 6532144 ~ 6534655 (-) True G407899
TU468578 other downstream 617152 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 705296 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 1085177 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1612467 4925968 ~ 4928818 (-) True G407509

Expression Profile