RNA id: TCONS_00003320


Basic Information

Item Value
RNA id TCONS_00003320
length 1020
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id XLOC_000969
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6159631 ~ 6173701 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGGTAGGAATTGCATCATAACAGCAGTGCTTCTTCATAAAGTTCATATAAGTTTCGGCATTTGGATCCAGaaagcttcatttcataAAAAACCGACATACATGGACTTAAAAACTCATCCCACTGGCTCATTTCAACCTTGTCCCCGAGTTTAGTGTCATTACTGTAAGCTGTTTTTCCCTTTATATTAACGGATGACGAAGaacaacatatttattgcacCTAAGCACTGAAAACCACTCCAGGCAAACAGCATCTGACCTTTAAATACACAAatgattaagaaaataaacaGTCTGACAAATATGAGCACTTATTATTCTGATTGAAAATGTTTTTTCCCCTCTGAATATAACTTAAGTCCTAAACTTAATCTTAAACTTAGCCTCCAAAGTATAGTATTTACTCTTATTTAGCTagaccagaagaaaaaaaaaaagtcaatttaaaaatcaaatcagGCCATTATAATACATAGTACAATTGCTTTTAGTTGTAGgaagtatttacatttacaatcaGTTTTCAGAAGCTCCTTAAGCATATCAGGAGCATCAGTGCAACTTAAATCACTTAAATAGTGAATTTAAATAGACAACAGCACTGTACATTCATCCTTCTAAAGTGTCAGCGATGTATTGTCTTAAAGATACAGCAATGGAGGGATTTATACATCATGTGATTCTCTCATAACATACTGAAGTCATTCTAACATATTAAGGTCTCCCACTCATTTTCCACAAagtgaatttataattttatatacatgAGTGGGAAGACTTAATGTGTTATATTGACTTAAATATGGTATACTTGCACTGCaaacatgcttttcttacttagatttcttGTCTTGTTTATGGTCCAAATaactaaaaactcttaaatcaagaagcattttctagacaagcaaataacatcgtcttgttttcagaaataatacgtcaaaattgagtgagttttccttaaaacaagctaaataatctgctaatggtgTAAGCAAAGTAAATGCATGTCAA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0048731 system development biological_process
GO:0002520 immune system development biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003319 lncRNA downstream 73879 6060026 ~ 6085752 (-) False XLOC_000968
TCONS_00003317 lncRNA downstream 134823 6014730 ~ 6024808 (-) False XLOC_000967
TCONS_00003318 lncRNA downstream 134823 6021516 ~ 6024808 (-) True XLOC_000967
TCONS_00003316 lncRNA downstream 616568 5536338 ~ 5543063 (-) True XLOC_000965
TCONS_00001531 lncRNA downstream 647969 5509804 ~ 5511662 (-) False XLOC_000965
TCONS_00003321 lncRNA upstream 47180 6220881 ~ 6225273 (-) False XLOC_000970
TCONS_00003322 lncRNA upstream 47180 6220881 ~ 6225285 (-) False XLOC_000970
TCONS_00001539 lncRNA upstream 47851 6221552 ~ 6225273 (-) False XLOC_000970
TCONS_00001540 lncRNA upstream 48000 6221701 ~ 6225285 (-) True XLOC_000970
TCONS_00003323 lncRNA upstream 224498 6398199 ~ 6400326 (-) True XLOC_000971
TCONS_00001536 mRNA downstream 73881 6068436 ~ 6085750 (-) True XLOC_000968
TCONS_00001535 mRNA downstream 130755 5798548 ~ 6028876 (-) False XLOC_000967
TCONS_00001533 mRNA downstream 413601 5606460 ~ 5746030 (-) False XLOC_000966
TCONS_00001534 mRNA downstream 414211 5728350 ~ 5745420 (-) True XLOC_000966
TCONS_00001529 mRNA downstream 616566 5504128 ~ 5543065 (-) False XLOC_000965
TCONS_00001537 mRNA upstream 44931 6218632 ~ 6225285 (-) False XLOC_000970
TCONS_00001541 mRNA upstream 229850 6403551 ~ 6494384 (-) True XLOC_000972
TCONS_00001544 mRNA upstream 1388615 7562316 ~ 7570181 (-) True XLOC_000976
TCONS_00001546 mRNA upstream 1400650 7574351 ~ 7603734 (-) False XLOC_000977
TCONS_00001547 mRNA upstream 1400746 7574447 ~ 7582859 (-) False XLOC_000977
TCONS_00001523 other downstream 1081143 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 1948979 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001518 other downstream 2861382 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 2861543 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 2861695 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001538 other upstream 47180 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 279703 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 968338 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 1400650 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 1458418 7632119 ~ 7650072 (-) False XLOC_000978

Expression Profile

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