RNA id: TCONS_00002906


Basic Information

Item Value
RNA id TCONS_00002906
length 1833
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id XLOC_000975
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7545049 ~ 7554339 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGTGAAATGACTGTGTGAAAATTGGGATGGGGGAATATTGGCAGCCTGGCCACAGTAACGTCATGTGCCTTTAACACACAGCTAAGAGGTGCTGTCGAAACCCTGGACGGGCGGAGAAAAAGGAAAGCAACCCTCACTTCATGAGTGGCCTTTTCCTTCTTCCCCGGTCTCCATCCCACTGTGGACAGACGCCACCGGTCGGAACAAGAAGGCGAGGTGGGTTGACTGCATGAGGACGATGTGACTTCCAAAACGATGGACGGATGACTTCTTACACGGACATGATGTTCTTGACGAAAGCTGTAAGAGGAGGAGCAGAAGTGCATAAGGAAATATCATCCCTACTGGCTCGCCATACAAGGCCAGAGGTGGCCTCTAAAAATAGCCATCGTAACGAGTCTGTGACAGATGAACATGAAAAAGGTACGAAAGGATAGCAAAAGCGTAATCCAAGTACACACCATGATGTAGTTTTGGGGCGCAGGAGCGGAGGGGCAGAAGTCAAGAAGCCGGAGTCCCAGGAGAGTGGTCCTGAAACATGGAGCAGCCCCTTCTTATTTATGCTATGCTAATGATGTCACGGGGGCGGAGCCTGTGATGCGCAAAGCTTCTTTAACTTTCTTAGGTCAAGCTGGAAGGAAGGCTGCCGCTTTCTCCAGTGTACGTGGTATTTTTAGATTTTGTGCTCCAGGGCTGCTTTTAAGACTTCTTGGCTGCGGTCAGCATTTTAGTTTTTTGCGTTGTCTTTGTTTTCAGGGTTTCTGTGTATTTATTTCATCCTTAGCCATGATTGTATGTAAATTATGAAGTCACCTGTTATGGGCTCTGTGTGTGTATTGAAGGAAGCAGCGGCTCAAGGAAGGCTTTTGATTACAGTGTTGATATTTTTAACTTGCATATGGTGGTCTCCGCCACTTATGGTTATACGGGAAGACTGAGGAAAAACAGTCCTCAGGACATGTTTGCACAGCAATAAATCAATTTGCATTTTAGACACTTTGGAAgatttttattgattaaaaaaataggtgtaaaacacaatttttactCAGAAATTGcaattatattttacaaataattgcGCTGAAAGGAATGCATCGAATTTGTAAACTAAAATGTACTACAAAGATCtgtataattaaacatttttcctCTATAACAAAAAAATGATCATAATGTAAGCAGATACTTTGTTATGTAATAATGAGAGTGgcaatttaacacatttaaaaggTAAACTATGTTCAGAATGGTACTTCTGAATCACAcacactgaaaataatcacaaataaaaGTAAGATTGCAGTAATTTCACCTTTAACTCAAAATTACGTATCGTTTTTTTTATAAGCTGTCAAATCAATAAAGTGGAGATATAACCTGAACACTACATAAATGTCAAAGATTAGTGGCTCATGTTCATATttctactattattttattattatttgtattcatATTGTTCGATGCTGTGCAGACAGGACGGTAGAGATATGACAAGAAAGCTGGGGTAGAAGGAGAGAGGACCACGAGGCGGGAATCGAACCCAGGTAGTCATGAATGCGGTTGCGCAATGTGTTTAGACACGAGACTAACTGACAAGCTCATGTTCATAGTTAATGTAATGTGATGATGTTACCTCTGCTACTCGTTTAGGATGCCTGTCCTGTAGCACAGATTCACTAAACTGTATTGACACCAGCTGATTAACTATGCTAACCCTTGTTTATTGGTTGTCTTGATCTGGATCAAAAAAGACCAAATCTAaatatgtacagctgaagtcagaattatcagtcctcctgaattattagcccgttgtatattttcc

Function

GO:

id name namespace
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003323 lncRNA downstream 1144723 6398199 ~ 6400326 (-) True XLOC_000971
TCONS_00003322 lncRNA downstream 1319764 6220881 ~ 6225285 (-) False XLOC_000970
TCONS_00001540 lncRNA downstream 1319764 6221701 ~ 6225285 (-) True XLOC_000970
TCONS_00003321 lncRNA downstream 1319776 6220881 ~ 6225273 (-) False XLOC_000970
TCONS_00001548 lncRNA upstream 26830 7581169 ~ 7581987 (-) True XLOC_000977
TCONS_00001551 lncRNA upstream 80474 7634813 ~ 7637680 (-) False XLOC_000978
TCONS_00002907 lncRNA upstream 104862 7659201 ~ 7659757 (-) True XLOC_000978
TCONS_00001553 lncRNA upstream 108299 7662638 ~ 7668555 (-) True XLOC_000979
TCONS_00001554 lncRNA upstream 145684 7700023 ~ 7701856 (-) True XLOC_000980
TCONS_00001541 mRNA downstream 1050665 6403551 ~ 6494384 (-) True XLOC_000972
TCONS_00001537 mRNA downstream 1319764 6218632 ~ 6225285 (-) False XLOC_000970
TCONS_00001536 mRNA downstream 1459299 6068436 ~ 6085750 (-) True XLOC_000968
TCONS_00001535 mRNA downstream 1516173 5798548 ~ 6028876 (-) False XLOC_000967
TCONS_00001534 mRNA downstream 1799629 5728350 ~ 5745420 (-) True XLOC_000966
TCONS_00001544 mRNA upstream 7977 7562316 ~ 7570181 (-) True XLOC_000976
TCONS_00001546 mRNA upstream 20012 7574351 ~ 7603734 (-) False XLOC_000977
TCONS_00001547 mRNA upstream 20108 7574447 ~ 7582859 (-) False XLOC_000977
TCONS_00001550 mRNA upstream 80119 7634458 ~ 7659870 (-) False XLOC_000978
TCONS_00001552 mRNA upstream 107752 7662091 ~ 7673376 (-) False XLOC_000979
TCONS_00001543 other downstream 402906 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001542 other downstream 1091530 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001538 other downstream 1322800 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001523 other downstream 2466561 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 3334397 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001545 other upstream 20012 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 77780 7632119 ~ 7650072 (-) False XLOC_000978
TCONS_00001556 other upstream 247192 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001562 other upstream 364456 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001563 other upstream 365141 7919480 ~ 7919567 (-) True XLOC_000984

Expression Profile

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