Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001548 |
| length | 321 |
| lncRNA type | retained_intron |
| GC content | 0.47 |
| exon number | 2 |
| gene id | XLOC_000977 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 7574351 ~ 7603734 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0003374 | dynamin family protein polymerization involved in mitochondrial fission | biological_process |
| GO:0098884 | postsynaptic neurotransmitter receptor internalization | biological_process |
| GO:0009615 | response to virus | biological_process |
| GO:0016185 | synaptic vesicle budding from presynaptic endocytic zone membrane | biological_process |
| GO:0048285 | organelle fission | biological_process |
| GO:0031623 | receptor internalization | biological_process |
| GO:0061025 | membrane fusion | biological_process |
| GO:0050803 | regulation of synapse structure or activity | biological_process |
| GO:0000266 | mitochondrial fission | biological_process |
| GO:0098844 | postsynaptic endocytic zone membrane | cellular_component |
| GO:0030424 | axon | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0015630 | microtubule cytoskeleton | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0031966 | mitochondrial membrane | cellular_component |
| GO:0014069 | postsynaptic density | cellular_component |
| GO:0043197 | dendritic spine | cellular_component |
| GO:0044327 | dendritic spine head | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030721-6 | Predicted to enable GTPase activity and microtubule binding activity. Acts upstream of or within response to virus. Predicted to be active in several cellular components, including cytoplasm; microtubule; and nucleus. Is expressed in head kidney. Human ortholog(s) of this gene implicated in alopecia areata; avian influenza; liver disease; and prostate cancer. Orthologous to human MX1 (MX dynamin like GTPase 1) and MX2 (MX dynamin like GTPase 2). |
| ensembl_id | ENSDART00000131454 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002906 | lncRNA | downstream | 26830 | 7545049 ~ 7554339 (-) | True | XLOC_000975 |
| TCONS_00003324 | lncRNA | downstream | 27006 | 7545049 ~ 7554163 (-) | False | XLOC_000975 |
| TCONS_00003323 | lncRNA | downstream | 1180843 | 6398199 ~ 6400326 (-) | True | XLOC_000971 |
| TCONS_00003322 | lncRNA | downstream | 1355884 | 6220881 ~ 6225285 (-) | False | XLOC_000970 |
| TCONS_00001540 | lncRNA | downstream | 1355884 | 6221701 ~ 6225285 (-) | True | XLOC_000970 |
| TCONS_00001551 | lncRNA | upstream | 52826 | 7634813 ~ 7637680 (-) | False | XLOC_000978 |
| TCONS_00002907 | lncRNA | upstream | 77214 | 7659201 ~ 7659757 (-) | True | XLOC_000978 |
| TCONS_00001553 | lncRNA | upstream | 80651 | 7662638 ~ 7668555 (-) | True | XLOC_000979 |
| TCONS_00001554 | lncRNA | upstream | 118036 | 7700023 ~ 7701856 (-) | True | XLOC_000980 |
| TCONS_00001555 | lncRNA | upstream | 189570 | 7771557 ~ 7844362 (-) | True | XLOC_000981 |
| TCONS_00001544 | mRNA | downstream | 10988 | 7562316 ~ 7570181 (-) | True | XLOC_000976 |
| TCONS_00001541 | mRNA | downstream | 1086785 | 6403551 ~ 6494384 (-) | True | XLOC_000972 |
| TCONS_00001537 | mRNA | downstream | 1355884 | 6218632 ~ 6225285 (-) | False | XLOC_000970 |
| TCONS_00001536 | mRNA | downstream | 1495419 | 6068436 ~ 6085750 (-) | True | XLOC_000968 |
| TCONS_00001535 | mRNA | downstream | 1552293 | 5798548 ~ 6028876 (-) | False | XLOC_000967 |
| TCONS_00001550 | mRNA | upstream | 52471 | 7634458 ~ 7659870 (-) | False | XLOC_000978 |
| TCONS_00001552 | mRNA | upstream | 80104 | 7662091 ~ 7673376 (-) | False | XLOC_000979 |
| TCONS_00001557 | mRNA | upstream | 265800 | 7847787 ~ 7894255 (-) | False | XLOC_000983 |
| TCONS_00001558 | mRNA | upstream | 265833 | 7847820 ~ 7893808 (-) | False | XLOC_000983 |
| TCONS_00001559 | mRNA | upstream | 307123 | 7889110 ~ 7894255 (-) | True | XLOC_000983 |
| TCONS_00001543 | other | downstream | 439026 | 7142039 ~ 7142143 (-) | True | XLOC_000974 |
| TCONS_00001542 | other | downstream | 1127650 | 6453404 ~ 6453519 (-) | True | XLOC_000973 |
| TCONS_00001538 | other | downstream | 1358920 | 6220881 ~ 6222249 (-) | False | XLOC_000970 |
| TCONS_00001523 | other | downstream | 2502681 | 5078371 ~ 5078488 (-) | True | XLOC_000959 |
| TCONS_00001521 | other | downstream | 3370517 | 4210498 ~ 4210652 (-) | True | XLOC_000957 |
| TCONS_00001549 | other | upstream | 50132 | 7632119 ~ 7650072 (-) | False | XLOC_000978 |
| TCONS_00001556 | other | upstream | 219544 | 7801531 ~ 7801646 (-) | True | XLOC_000982 |
| TCONS_00001562 | other | upstream | 336808 | 7918795 ~ 7918882 (-) | False | XLOC_000984 |
| TCONS_00001563 | other | upstream | 337493 | 7919480 ~ 7919567 (-) | True | XLOC_000984 |
| TCONS_00001564 | other | upstream | 338132 | 7920119 ~ 7920206 (-) | True | XLOC_000985 |
