RNA id: TCONS_00000163


Basic Information

Item Value
RNA id TCONS_00000163
length 316
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_000085
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7517449 ~ 7554463 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTCAATTCATGCTAAATCTTACGAGAGGAATCTTGTGCTCCAGACTGTCATGATATCGCTCAGGAcgtggattaaagTGCTGGTAgacattgacttgcattatatgaATCGCCAAGGACCGCGGGTTCAGCTAAAAACCTTGTATGTTCTAGTCACCCACCTCTtgaatggcctgaggGCTGGAGAATTCACTGCTGACCAGATTGAGGACTTCAAAGAGGCCTTTGGTCTCTTTGACAGAGTTGGTGACAGCAAGGTTGCCTACAACCAGGTTGCCGATATCATGCGTGCCCTGGGTCAGAACCCCACCAACA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0044297 cell body cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0016020 membrane cellular_component
GO:0150034 distal axon cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043295 glutathione binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005523 tropomyosin binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0030172 troponin C binding molecular_function
GO:0031013 troponin I binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0004364 glutathione transferase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko00480 Glutathione metabolism

ZFIN:

id description
ZDB-GENE-000322-6 Predicted to enable calcium ion binding activity. Is expressed in musculature system; pectoral fin; and somite. Orthologous to human MYL1 (myosin light chain 1).

Ensembl:

ensembl_id ENSDART00000148276

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000159 lncRNA upstream 14979 7517449 ~ 7523930 (+) False XLOC_000085
TCONS_00003025 lncRNA upstream 26147 7512529 ~ 7512762 (+) True XLOC_000084
TCONS_00000156 lncRNA upstream 422995 7092273 ~ 7115914 (+) True XLOC_000082
TCONS_00000155 lncRNA upstream 443435 7092273 ~ 7095474 (+) False XLOC_000082
TCONS_00000153 lncRNA upstream 548882 6956913 ~ 6990027 (+) True XLOC_000080
TCONS_00000171 lncRNA downstream 6345 7556999 ~ 7560854 (+) False XLOC_000086
TCONS_00002810 lncRNA downstream 121467 7672121 ~ 7674229 (+) True XLOC_000087
TCONS_00003026 lncRNA downstream 1023123 8573777 ~ 8575057 (+) True XLOC_000097
TCONS_00000190 lncRNA downstream 1024653 8575307 ~ 8577274 (+) True XLOC_000098
TCONS_00000192 lncRNA downstream 1036576 8587230 ~ 8590636 (+) False XLOC_000100
TCONS_00000158 mRNA upstream 90114 7414318 ~ 7448795 (+) True XLOC_000083
TCONS_00000157 mRNA upstream 90825 7189856 ~ 7448084 (+) False XLOC_000083
TCONS_00000151 mRNA upstream 613502 6817292 ~ 6925407 (+) False XLOC_000079
TCONS_00000152 mRNA upstream 613796 6862917 ~ 6925113 (+) True XLOC_000079
TCONS_00000150 mRNA upstream 613806 6817292 ~ 6925103 (+) False XLOC_000079
TCONS_00000167 mRNA downstream 6311 7556965 ~ 7561134 (+) False XLOC_000086
TCONS_00000168 mRNA downstream 6311 7556965 ~ 7561222 (+) False XLOC_000086
TCONS_00000169 mRNA downstream 6323 7556977 ~ 7561071 (+) False XLOC_000086
TCONS_00000170 mRNA downstream 6323 7556977 ~ 7561221 (+) False XLOC_000086
TCONS_00000172 mRNA downstream 6364 7557018 ~ 7561014 (+) False XLOC_000086
TCONS_00000154 other upstream 474966 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 751105 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 1353377 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 2036825 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 2088465 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 1603440 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 1604339 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 1667994 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 2501120 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 2501130 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile

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