RNA id: TCONS_00001550


Basic Information

Item Value
RNA id TCONS_00001550
length 1364
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_000978
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7632119 ~ 7659870 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTTTCAGAGCGACGCTGCCATTCCGCGGAGCCTGCGCTTTTTAACTGTTTACATATGAAGGATGCGTGTTGAGACATATTAATGCCAAAAGAACCTGTTTACATGGATTATCACCCGTTGTCCGGCTGTTGTGTTAAATTGACTTTATAGATTGCCAGTTGCGAAGGAGCTCTTATTTTATGATTACGTTTTATCCTGCAGATGAGAGCGACTAACAGCATCGGATTGTGCTCGTTTTAGTGCCTGCGGAGCTCTCACTTCTAATCAGATTCGGACTGCTGAACTGTTTCTCCATCGCAATGGATGCGACTGTCTGGAGTTATATATTTGGTCTCTTCGTGTTCGCTTGTCGGGTAAAACTGACTCGATCAACAGTTTTAGAATCAATATATTGGAATACTTCCAACACCAAGTTTGTCCCAGGAAGAGGTGTAGTATTATACCCTCAGATCGGAGACAAAATGGACATTGTGTGTCCAAGAATCAAGCCAGGCTCCACTGAGCAGACGAACATTGAATACTTCCGGGTCTATCTTGTTCCCAAAGAACAACTCGAGACCTGCCATGTTACTAAAAGCGACATGTTACTGCTCAACTGTGACAAGCCGGACCAGGACGTCAAATTCACCTTCAAGTTTCAAGAGTTCAGCCCCAACCTGTGGGGCCTGGAGTTCTTAAGAGGGAAGGACTATCACATCATCTCCACCTCTAACAGCACTTTTGAAGGACTGGACAACCACCATGGTGGCGTTTGCAGGAGCAAATCCATGAAGCTGGTTTTGCGGGTTGGCCAGAGTCCTACAGATTCATTCTCAGCGAAAAACCATCCCACAAGAAATCCTCCAAAATACCCTGAAAATAAGGACCAAAATACCTTCAGCAAAGAAAATGATGTCAGTCAGATTGACTCCATGCAGAACGGAGAATCCGGAGGGAAGAGTGGCGAGTCTGTGGGATCTGCTGGGTCTGATGTGGCCCTGTTTGCAGGCGTCGCATCCGGGGCTGTGAtcttcatcctcatcatcatcgcACTTGTAGCACTTCTGCATCGGCGTCATCAGAAGCACTCGGCGCAGTGCTCCGGACAGCTGCCCTTAAACACGCTGCCCAAACGTGGCAGTGGTGCCAGTGGCGGCAGCAACAACAACGGCTCCGAGCCCAGCGACATCATCTTTCCTATCCGGACCTCAGGAAGCATGTACTGCCCGCATTACGAGAAGGTTAGCGGAGACTACGGACACCCCGTGTACATCGTCCAAGAAATGCCACCGCAGAATCCGGCAAATATTTACTACAAGGTTTGACGGAGCGTGGACAGTAAACCACGGACACTGAAAGGCCAATAGAGGCTGCTCCAAATGA

Function

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046875 ephrin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010618-1 Predicted to enable ephrin receptor binding activity. Acts upstream of or within Kupffer's vesicle development and blood vessel development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in margin. Orthologous to human EFNB2 (ephrin B2).

Ensembl:

ensembl_id ENSDART00000085203

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001548 lncRNA downstream 52471 7581169 ~ 7581987 (-) True XLOC_000977
TCONS_00002906 lncRNA downstream 80119 7545049 ~ 7554339 (-) True XLOC_000975
TCONS_00003324 lncRNA downstream 80295 7545049 ~ 7554163 (-) False XLOC_000975
TCONS_00003323 lncRNA downstream 1234132 6398199 ~ 6400326 (-) True XLOC_000971
TCONS_00001540 lncRNA downstream 1409173 6221701 ~ 6225285 (-) True XLOC_000970
TCONS_00001553 lncRNA upstream 2768 7662638 ~ 7668555 (-) True XLOC_000979
TCONS_00001554 lncRNA upstream 40153 7700023 ~ 7701856 (-) True XLOC_000980
TCONS_00001555 lncRNA upstream 111687 7771557 ~ 7844362 (-) True XLOC_000981
TCONS_00002910 lncRNA upstream 255610 7915480 ~ 7920626 (-) False XLOC_000984
TCONS_00002913 lncRNA upstream 255610 7915480 ~ 7920627 (-) False XLOC_000984
TCONS_00001546 mRNA downstream 30724 7574351 ~ 7603734 (-) False XLOC_000977
TCONS_00001547 mRNA downstream 51599 7574447 ~ 7582859 (-) False XLOC_000977
TCONS_00001544 mRNA downstream 64277 7562316 ~ 7570181 (-) True XLOC_000976
TCONS_00001541 mRNA downstream 1140074 6403551 ~ 6494384 (-) True XLOC_000972
TCONS_00001537 mRNA downstream 1409173 6218632 ~ 6225285 (-) False XLOC_000970
TCONS_00001552 mRNA upstream 2221 7662091 ~ 7673376 (-) False XLOC_000979
TCONS_00001557 mRNA upstream 187917 7847787 ~ 7894255 (-) False XLOC_000983
TCONS_00001558 mRNA upstream 187950 7847820 ~ 7893808 (-) False XLOC_000983
TCONS_00001559 mRNA upstream 229240 7889110 ~ 7894255 (-) True XLOC_000983
TCONS_00001560 mRNA upstream 248412 7908282 ~ 7912932 (-) False XLOC_000984
TCONS_00001545 other downstream 30885 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001543 other downstream 492315 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001542 other downstream 1180939 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001538 other downstream 1412209 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001523 other downstream 2555970 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001556 other upstream 141661 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001562 other upstream 258925 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001563 other upstream 259610 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001564 other upstream 260249 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001570 other upstream 310536 7970406 ~ 7975769 (-) True XLOC_000989

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_04227918_04239792.mRNA True 1742 mRNA 0.43 7 CI01000299 4227520 ~ 4239792 (-)