RNA id: TCONS_00001552


Basic Information

Item Value
RNA id TCONS_00001552
length 1861
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_000979
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7662091 ~ 7673376 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTGGGATCTGAGATCAGCCATCCTCCATCTTGCTTTTTAACTATACAAGATAAATTGTATGCTGCAGATAAAATACCATTGTTATTAAACCATTTACTTCCAAATAAGAGTTCCGCCTTCGAGATTATTGTCATGCAGTCTGCGCTGATTCCTTAAATGTGCGATTTGGGGTTAGTGTGAAGGTCTAGCAGGTGTGTGTGTTCGTCAGTCCGATGCTTTAGTGGTGTTCAGTCTCCTGGCTTCTGCAACTCAACCGGCGTCTGAAATGGGTCGCTCGAGGAGCCGCAGCTCTTCCCGCTCCAAGCACTCCAAAACCAGTAAGCACAGCAAAAAGCGAAGCAGATCTCGATCGAGATCCCGGGACAGGGAGAGGAAGAGGCGCTCCAAGTCGCGAGAGTCCAAAAGGAACCGCAGGAGAGAGTCGCGCTCCCGGTCCAGATCAAACACGGCCACGTCTCGGCGGGACCGAGAGAGAGCCGCATCTCCGCCAGAGAGGATCGACATTTTCGGCAGGGCGCTGAGCAAGAGGAGCGCTGTGGATGAAAAGCAGAagaaagaagaggaggagaagaaAGTCGAAATGGAAAGACAGAGGAGAATTCGACAGCAGGAGATCGAGGAGCGGCTGATTGAGGAGGAGACAGCGCGGCGCGTTGAGGAACTTGTAGCCAAACGTGTGGAGGAGGAACTTGAAAAGCGAAAGGATGAGATTGAAAGAGAAGTGTTGCGACGGGTGGAGGAGGCCAAGCGCATCATGGAGAAGCAGTTGCTGGAGGAGCTCGAGAGACAGAGACACGCAGAGCTCGCAGCTCAGAAAGCTCGGGAGGAGGAAGAGAAATCCAAACGCGAAGAACTGGAGAAGATCCTGGTGGACAACAATCGCAAGATAGCCGACGCTCAAGCTAAACTGGCAGAGGACCAGCTACGAATAGTTGAAGAGCAAAGAAAAATACACGAGGAGCGTATGAAGCTGGAGCAAGAGCGACAGAAACAGCAGAAGGAAGAACAGAAGATGATTTTGGGGAAAGGGAAGTCAAGGCCTaaactttctttttctttaaaggCTTCTGAGTGACAAAAACAACGTGGCCAGGATTTCTCCAGACTTTCTCCAGACCACTCTCCGTGTGAGGCGATAAGTTCTCCGTAGGTCTCATGTGGTATTTCAAATTCTCAGAACAATGGGAACAATCATTTTGTCAAATACCCTTAAGTTTTTTCTCCCAGGTTTTAACTGTCTGTTTTGTATTGCTGACTCTTGTATAGATAACCTCCACTTGTCCTCCATGTAGCGTCTGCAACCACGTTTGGTGCACGACACGAGTAGAGTGAAAAAGAGCCGGCCTGGCCTGTTCTTTCATCCAAGTGTACAATATGAATTCCAGTTTCACTAATTTAAGACCACAACTGATTTTCCTTACCGAAAATTTGaagtacttttattttttttaatagtttattcatAGTATAATGGAAGTAGAATGAATTTGGCAGGGAAACAGCTTGAACTTGAAGTCCATCCCTCTATTTTGATTAGCACAGATCTGATTTAAAGGTAACCAGTCCGAGCAAGAAGCATCATAAAACAACAGTAACCTCCTTTTACCATTTTTACCTTCACTTTAATACACTCATACATACTTTCAAGTAATGTAGACTCGAGAGGTAAAGAGATGCTGTAAGAAAGGGTACCTGGTTGTTGCATGTCAATGAGCTGCGTTCTATGTTAGTGATGAAATGCTTTTATAGAGGCGATTGAGTGAAAGATTGCTGATTGGCCGGAGTTTGTGTTTGTGGTTAAATATTTGACCCAGTTATCAAGGATATGTCAAGAATCTCCAATAAATCCATGAATGTG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-736 Predicted to be active in mitochondrion and nucleoplasm. Is expressed in brain. Orthologous to human ARGLU1 (arginine and glutamate rich 1).

Ensembl:

ensembl_id ENSDART00000013264

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002907 lncRNA downstream 2334 7659201 ~ 7659757 (-) True XLOC_000978
TCONS_00001551 lncRNA downstream 24411 7634813 ~ 7637680 (-) False XLOC_000978
TCONS_00001548 lncRNA downstream 80104 7581169 ~ 7581987 (-) True XLOC_000977
TCONS_00002906 lncRNA downstream 107752 7545049 ~ 7554339 (-) True XLOC_000975
TCONS_00003324 lncRNA downstream 107928 7545049 ~ 7554163 (-) False XLOC_000975
TCONS_00001554 lncRNA upstream 26647 7700023 ~ 7701856 (-) True XLOC_000980
TCONS_00001555 lncRNA upstream 98181 7771557 ~ 7844362 (-) True XLOC_000981
TCONS_00002910 lncRNA upstream 242104 7915480 ~ 7920626 (-) False XLOC_000984
TCONS_00002913 lncRNA upstream 242104 7915480 ~ 7920627 (-) False XLOC_000984
TCONS_00002911 lncRNA upstream 242104 7915480 ~ 7920628 (-) False XLOC_000984
TCONS_00001550 mRNA downstream 2221 7634458 ~ 7659870 (-) False XLOC_000978
TCONS_00001546 mRNA downstream 58357 7574351 ~ 7603734 (-) False XLOC_000977
TCONS_00001547 mRNA downstream 79232 7574447 ~ 7582859 (-) False XLOC_000977
TCONS_00001544 mRNA downstream 91910 7562316 ~ 7570181 (-) True XLOC_000976
TCONS_00001541 mRNA downstream 1167707 6403551 ~ 6494384 (-) True XLOC_000972
TCONS_00001557 mRNA upstream 174411 7847787 ~ 7894255 (-) False XLOC_000983
TCONS_00001558 mRNA upstream 174444 7847820 ~ 7893808 (-) False XLOC_000983
TCONS_00001559 mRNA upstream 215734 7889110 ~ 7894255 (-) True XLOC_000983
TCONS_00001560 mRNA upstream 234906 7908282 ~ 7912932 (-) False XLOC_000984
TCONS_00001561 mRNA upstream 234906 7908282 ~ 7917062 (-) False XLOC_000984
TCONS_00001549 other downstream 12019 7632119 ~ 7650072 (-) False XLOC_000978
TCONS_00001545 other downstream 58518 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001543 other downstream 519948 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001542 other downstream 1208572 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001538 other downstream 1439842 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001556 other upstream 128155 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001562 other upstream 245419 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001563 other upstream 246104 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001564 other upstream 246743 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001570 other upstream 297030 7970406 ~ 7975769 (-) True XLOC_000989

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_04242809_04251680.mRNA True 1607 mRNA 0.47 4 CI01000299 4242197 ~ 4251865 (-)
bowfin (Amia calva) AMCG00014830 True 825 mRNA 0.51 4 CM030128.1 34942975 ~ 34960249 (-)