RNA id: TCONS_00001554


Basic Information

Item Value
RNA id TCONS_00001554
length 348
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_000980
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7700023 ~ 7701856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCCATTAGGCGATCATCGACAGAAGCAACAAACAATTCTTAAAGCTAAAACCGTCAGTAGTGTAGTTACCAGTATCTTAGCCGTTCAAACTAGAGTCACATCATGATGGAGAGGAAGAACTAACAACTTATACTCTGAACCATGACGTTTACGGTGGTTGGCTGACGTTTGACATCATTTCCATGAACCAGCACTCAGAAACACGAGAGCATCAATGATGTTGCATGTCCAAAGTCTTAcagatttgacttttttttttgtcctgacCTACAAATCAACATGTACTGTAAGTGTAATATTTACTTGCATAATGATTTGTTTCTCACATGGTTAAGGTGTTTTTTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001553 lncRNA downstream 31468 7662638 ~ 7668555 (-) True XLOC_000979
TCONS_00002907 lncRNA downstream 40266 7659201 ~ 7659757 (-) True XLOC_000978
TCONS_00001551 lncRNA downstream 62343 7634813 ~ 7637680 (-) False XLOC_000978
TCONS_00001548 lncRNA downstream 118036 7581169 ~ 7581987 (-) True XLOC_000977
TCONS_00002906 lncRNA downstream 145684 7545049 ~ 7554339 (-) True XLOC_000975
TCONS_00001555 lncRNA upstream 69701 7771557 ~ 7844362 (-) True XLOC_000981
TCONS_00002910 lncRNA upstream 213624 7915480 ~ 7920626 (-) False XLOC_000984
TCONS_00002913 lncRNA upstream 213624 7915480 ~ 7920627 (-) False XLOC_000984
TCONS_00002911 lncRNA upstream 213624 7915480 ~ 7920628 (-) False XLOC_000984
TCONS_00003326 lncRNA upstream 213624 7915480 ~ 7920638 (-) False XLOC_000984
TCONS_00001552 mRNA downstream 26647 7662091 ~ 7673376 (-) False XLOC_000979
TCONS_00001550 mRNA downstream 40153 7634458 ~ 7659870 (-) False XLOC_000978
TCONS_00001546 mRNA downstream 96289 7574351 ~ 7603734 (-) False XLOC_000977
TCONS_00001547 mRNA downstream 117164 7574447 ~ 7582859 (-) False XLOC_000977
TCONS_00001544 mRNA downstream 129842 7562316 ~ 7570181 (-) True XLOC_000976
TCONS_00001557 mRNA upstream 145931 7847787 ~ 7894255 (-) False XLOC_000983
TCONS_00001558 mRNA upstream 145964 7847820 ~ 7893808 (-) False XLOC_000983
TCONS_00001559 mRNA upstream 187254 7889110 ~ 7894255 (-) True XLOC_000983
TCONS_00001560 mRNA upstream 206426 7908282 ~ 7912932 (-) False XLOC_000984
TCONS_00001561 mRNA upstream 206426 7908282 ~ 7917062 (-) False XLOC_000984
TCONS_00001549 other downstream 49951 7632119 ~ 7650072 (-) False XLOC_000978
TCONS_00001545 other downstream 96450 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001543 other downstream 557880 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001542 other downstream 1246504 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001538 other downstream 1477774 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001556 other upstream 99675 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001562 other upstream 216939 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001563 other upstream 217624 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001564 other upstream 218263 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001570 other upstream 268550 7970406 ~ 7975769 (-) True XLOC_000989

Expression Profile

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