RNA id: TCONS_00001557


Basic Information

Item Value
RNA id TCONS_00001557
length 4032
RNA type mRNA
GC content 0.53
exon number 16
gene id XLOC_000983
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7847787 ~ 7894255 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGTCGGCTCAGGGAATGCAGACGCCGAAGCATGCAGACTGTAGTGTAGCCAGACTGGCACATAAAAGGGGGGAAAGGGGATAAACAGCTCCAGCGACCGGCTAGAAGCAGCGGCGACCGACAAAAGCGGCAGGTAGACGTTGTCGCATTCCATGACAGTGACTGGGCGGACCTAAACTGTCTCCCACCGGCCCGTAGAGCTCATTTAACACATGAACAAGGAGAAATACTGGCAAATGTCAATAATAGGAGTCAAGCGAGCGGCTTGTGAGGGATCAGAGCTCTGAGACTGGCTGGCGGAGCCCCGTTAAGACGCACAAGCGGATTAGGACTCGCGAGCAGGTGCCTTTGTTGGCTCGCGCCGTTGCCAGTGGAGACCCGCAGTAGCCCGACGCGCTTCTGTAAAATTAATGCCTGCAAATGAGCGTCTCTTCAGTGCACGGAGGATAACACGCGTCTGACAGTTCTAGGAGTTTTTAACCAATGCAAGTCCCGGCACCATGTTCTACGGTTCCTCATCTGCCAGCATGTCTCTGCCCTCCAAGAACCGCCTGAAGCGCCAGAGTCGCACTTTTACGCAGGTTCTGTACCGGACACTGAGTTACCGGGACCGCCGCTCTGTGACCGACTTACCTGAGCAGGTGCGTGATGATCCAGCGGAGCTCTCCACCCAATCCTCCGCCCCAGGTGTGCTGAAGATATTTGGTGATGAAATCAGTGCCGGCGCCAATTACAAAAGTGTTCTTGCTACACCTCGCTCCAGCGCCCAAGAGCTGATCAAAGAGGCGCTTGAGCGTTACTCTCTGAACAAGACCTCTGCCTGTAATTTTGTGTTGTGTGATGTGATCGGACGGTTTGAGGGTCCTGACCGGCGGTGGCGGACTGAGTGTCTTCGGGCGCTGGGAAACAATGAAAAGCCCCTTCTCCTGCAGGACCTCTGGAAGCCGAAGGAAGGTTTCTCCCGCCGCTTTGAGCTCAGACGGAGAGCTGAAGTAGAGGAGCTGGCAGCAAAAGAGAAGGACACAGTCACCGCAGATATCAATGCGCAAGCGAGGAAGCTGCAGAGAAACCGAGCCAAAGGAACGATGACTCTCCAGCACGGCTCCTCGTTCTGCCGCAGCCTCAGTGAAACCAGCCTTAACCTGGTGGGTTTGCCTGGTGAAGAACCCAAACGCTACTACTCCACCCTCCCTGGACCCATCAGGACACGCTCCGCACGGGACTCTGAGATCCGCAAAGAGAGAGATGGAGGAGGAGTAAAGCACTCGCTCTACCAGTCGCCACACCTGCTGCTCCTTCAGGGCTACAACCAACAGGATTGCCTGGTTTACCTGTTGAACCGAGAGCAGCACACAGTTGGTCAGGAAACAGCATCAGCACGGCCAAATATCTGCCTGTCATCTCCGGATGTGCTTCCACTTCACTGCCGAATTCGTCGTGCTGCGCAAAGGCGCTCTTCCCCAGACCAGCGGCTTCTCCTGGAGCCCGTTGCTCATGGGAATGTGTTGGTAAACTTCATGCGAATTGAGCGTCCCACACCCCTCCGTCACGGGGATTTGCTGTCCTTTGGTGCTCATTACATTTTCCTGTACAAAGATCCTCTGAGTGCTAAACCTCTCCCTGCCCAAACTCTCACCAGACTTCGTACCCTAGCAAAACTCTGCGATGGTGAGTCTGGAGGTTTGCCTGAGAAAGGAGATGCTTGTCGAATGTGTGGAGCTGTTTTACACGAACCGGCAGCATCCTCTAGACGTAGCTCTAAAGCTCCAGCACGAGGGTCACAGAAACGAAAGCTGGCGCTGGAATTTGAGCGGGCTCACGAGGACGCACTGGTGAACCGGGTGCTGACGCTCATCGAGCCCAGCGGGGACGACCACAAGCTGACACCAGCATATTTGCTTTGTCTATGCATCAAGCACTCAGCGAATACATTTCCACCCGGCAGCTTCGGCAAACTCTTACAGAAAATCGCCAAGAGGATTCAGACCATAGCATGGGAGAAGACAAAGGAGTTGGCACAGAAGCAAGCTCAGCATCAAGATCCTGCCTCGCTGTCTCTGCTCAGCATCTCAGACCTCGTACCAGATCTCCAGTTCATTTTCTTCTGGATGTCCAATGCCATCGAAATACTGTATTTTATCCAGCAGAAATCACCTGCGTACATGCAGACTATTGAGCTCATGGACGATAAAGCAGGATCCAAAGAATCTCTCCTCTCAGCAACAATATCAGCAAATGAAGAGGCGATGACCATACTGGAGGAAGTGATCATGTACACCTTTCAGCAGTGTGTCTACTACATCACTAAGACGTTGTATGTGGTGCTGCCGGGCCTGTTGGACTGTAACCCATTTGGGACGGAGCCTTCATCAGAGCAGTGCCGGCGGgctgcaggagtgtgtgtgtgtgcagtgtgtgtgatGCCAGAAGCCGTTCGCAGGGTGGTCAGTGTGTTTCAAACCACATCAGACCTGCTCCAGCAGTACCAGGTTCATTCAGAGATTCAGAGTCAGATGTTCGCCTACCTCTTCTTCTTCACCAACGTCTCGCTCTTTAATCAACTCATCGATAAAGGTCCCGCTCGTGGCTGGTTTCAGCGCTCTCGTGTCCTGCAGATCCAGGCGAGTGTGAAGATTTTGTTAGACTGGGCTAAAGGAGCAGGTCATAATCATCTTGCACAGAAATTCTTTGCTAAATTCTGTAGCACAGTGACCATCCTGGCCTCGCCTCCACAGCAGCTTTCACAGATGAGCTGGAAAGCCTTATGTGCAGAGCATCCGTCTCTAAAGCCTGTCCAGCTTCACAGAATCCTCACTCAATACCAGCTCATGGCTGAACTTGGGCCTCTACCAATCTGGCAACCCAGCAGTGAAGATGAGGCCTATATCTACAGAACAGTTGATCTACTGGAGAGCTTTGAGAATCACCCTCCTATTGTGCTGCCAAGTGCTGGGTTTAAGGTGGATTTGGAGAGTGACTGTGTGGAGGACAGTATTTATCGTCAGCTGCTTTACGTTCGTCACTTTGTTTGGGGGCTTCGCACTAAAACTCATCCATCTAATGGCTGTACAGACCGACAGGATGCCCagCGTGAGCCTCCGCAGCCTCACTCCAGTCCTCATCCGGCTCCATCTGTCCGCGGGGAAGGAGAAGGCGAGGTGCGCAGCTCCTCCACGACTCTTGGAGGAAGAGGAGAAGGAGCAGGAGCCGAAGACCGAACACGGGACAAACCAACACACGGCATTCACTACAGAAACGGCTCCGGCGCCCGTTATGCCAACCAAAGCCAAGCCACAGACTCTTCCTGTATACTGACTCCACCAAACACCCCGCTCTATCCGGAACACACGTACATACAGTCCAACACAGCGCACTACCCGGAGCATGCTTCACaagagcacacacatacacactcgcacACTAAGACCAATGGTTGCATGCGTTCTACTCCTGAGCACAAGAAAATCAATGGCTTCATCAGCAATGGCATTGAAGGCCCTTTGAGTGGTTGTGGTTTTCCTTTCCCTGTCCCTGTGTCTCATCTGGGCCCAAAGTCTGATGATATCTGTTCCGTCTTTGTAGTGGACCTGGATAAAGGACCGTACGGCCTGGGAATGGGACTGATCGATGGACTTCACACCCCTCTGAACTCTCCTGGAATCTACATCAGGACTCTGATTCCAGATGGACCTGCTGCTGCAGATGGACGACTCTGCATCGGTGACAGGATCCTGGCAGTGAACGGAACCAGTCTCATTGGAGCAGACTATCAGAGTGCTGTGGATTTGATTCGTCTGGGGGGAGGACGGCTCCGGTTTCTTGTCGCCAAATCAGATCTCGAAGTATCAGAGAAGATCAGTGCCTCTTCCTGCTGAGAGAGAGGCTGCAAGTGTGACCCTCTACCTAGACGAAATATGAGGAGGACAGAGAGTCCTCAGTCTCGAGACTGGAGAACAAGCACACTATAGGACCTCTCAGCGCCTACAGCCCCTCTGTCTCTTACACAGCCCTGTACAATACTGCACTCAatc

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0007275 multicellular organism development biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-071206-1 Predicted to enable GTPase binding activity. Acts upstream of or within neural crest cell migration. Predicted to be active in microtubule. Orthologous to human RADIL (Rap associating with DIL domain).

Ensembl:

ensembl_id ENSDART00000167126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001555 lncRNA downstream 3425 7771557 ~ 7844362 (-) True XLOC_000981
TCONS_00001554 lncRNA downstream 145931 7700023 ~ 7701856 (-) True XLOC_000980
TCONS_00001553 lncRNA downstream 179232 7662638 ~ 7668555 (-) True XLOC_000979
TCONS_00002907 lncRNA downstream 188030 7659201 ~ 7659757 (-) True XLOC_000978
TCONS_00001551 lncRNA downstream 210107 7634813 ~ 7637680 (-) False XLOC_000978
TCONS_00002910 lncRNA upstream 21225 7915480 ~ 7920626 (-) False XLOC_000984
TCONS_00002913 lncRNA upstream 21225 7915480 ~ 7920627 (-) False XLOC_000984
TCONS_00002911 lncRNA upstream 21225 7915480 ~ 7920628 (-) False XLOC_000984
TCONS_00003326 lncRNA upstream 21225 7915480 ~ 7920638 (-) False XLOC_000984
TCONS_00003325 lncRNA upstream 21225 7915480 ~ 7920638 (-) False XLOC_000984
TCONS_00001552 mRNA downstream 174411 7662091 ~ 7673376 (-) False XLOC_000979
TCONS_00001550 mRNA downstream 187917 7634458 ~ 7659870 (-) False XLOC_000978
TCONS_00001546 mRNA downstream 244053 7574351 ~ 7603734 (-) False XLOC_000977
TCONS_00001547 mRNA downstream 264928 7574447 ~ 7582859 (-) False XLOC_000977
TCONS_00001544 mRNA downstream 277606 7562316 ~ 7570181 (-) True XLOC_000976
TCONS_00001560 mRNA upstream 14027 7908282 ~ 7912932 (-) False XLOC_000984
TCONS_00001561 mRNA upstream 14027 7908282 ~ 7917062 (-) False XLOC_000984
TCONS_00001565 mRNA upstream 30701 7924956 ~ 7930679 (-) True XLOC_000986
TCONS_00001566 mRNA upstream 42015 7936270 ~ 7939514 (-) True XLOC_000987
TCONS_00001567 mRNA upstream 52587 7946842 ~ 7951002 (-) True XLOC_000988
TCONS_00001556 other downstream 46141 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001549 other downstream 197715 7632119 ~ 7650072 (-) False XLOC_000978
TCONS_00001545 other downstream 244214 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001543 other downstream 705644 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001542 other downstream 1394268 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001562 other upstream 24540 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001563 other upstream 25225 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001564 other upstream 25864 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001570 other upstream 76151 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001587 other upstream 658495 8552750 ~ 8553298 (-) True XLOC_000999

Expression Profile

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