RNA id: TU495822


Basic Information

Item Value
RNA id TU495822
length 572
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id G431814
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1311702 ~ 1312434 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCCACTCCCATCTGTCCTCCCACTTGTCAATCATATCTTTCCTCTTGTCCGTCAACTGCAGCAACTTCTCTTTAATCTGTGGGACAGGTAAATGGACATGAAGGACTGGAACGAGATATCTAAAGATGGTTTTTCAATGGTCCAGTGGTTGTATAAGAACCTCTGAATGCGTCGTGTGCGGTTGTACCCACCTCCTCTGATGCATAGTGTTTCCGCGCCAGGAGAGACTTGCCCAGCTCGATGCAGGCCGTGAAACTGTCATTACGGGCATCGATTTCAGCTTTGATACCCTGGTGGTTGTTCATGAGAAGCTCCACAGATGACACATCCCTGGGCTTCTCCTGAGTCTCGATAAGGCGGATGACGTCCTCCATCCAGAGCATGAGGTCACGCACCATACTGAAGAAGCGGAACTTGTCTCCGGTATCCAGCAGTCGTGCCCGTCGGCCCTCGCAGGCTTCCAGAAGACTCCTCCAGGCCTCCAGCACCTCGCCCTCACGCCGCTGGATGTCGTCGGCTTTGTCTCCAGCATATGCTGACTGCAGGCGCACGGCATCTTCCTGCAACTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495827 lncRNA downstream 824 1308031 ~ 1310878 (-) True G431815
TU495872 lncRNA downstream 21357 1289950 ~ 1290345 (-) True G431853
TU495871 lncRNA downstream 24915 1286584 ~ 1286787 (-) True G431852
TU495870 lncRNA downstream 26776 1284677 ~ 1284926 (-) True CI01000306_01284891_01287606
TU495868 lncRNA downstream 31632 1279518 ~ 1280070 (-) True G431849
TU495874 lncRNA upstream 10740 1323174 ~ 1323386 (-) True G431855
TU495876 lncRNA upstream 11907 1324341 ~ 1324541 (-) True G431857
TU495877 lncRNA upstream 12119 1324553 ~ 1324758 (-) True G431858
TU495902 lncRNA upstream 67441 1379875 ~ 1380127 (-) True G431877
TU495903 lncRNA upstream 72433 1384867 ~ 1385127 (-) True G431878
CI01000306_01284891_01287606.mRNA mRNA downstream 24072 1284823 ~ 1287630 (-) False CI01000306_01284891_01287606
CI01000306_01201604_01202608.mRNA mRNA downstream 107629 1200682 ~ 1204073 (-) True CI01000306_01201604_01202608
CI01000306_01120958_01127237.mRNA mRNA downstream 184142 1120816 ~ 1127560 (-) True CI01000306_01120958_01127237
CI01000306_01109880_01112379.mRNA mRNA downstream 198899 1109779 ~ 1112803 (-) True CI01000306_01109880_01112379
CI01000306_01086915_01093095.mRNA mRNA downstream 218601 1086768 ~ 1093101 (-) True CI01000306_01086915_01093095
CI01000306_01439864_01463150.mRNA mRNA upstream 127352 1439786 ~ 1463150 (-) True CI01000306_01439864_01463150
CI01000306_01469486_01475137.mRNA mRNA upstream 156354 1468788 ~ 1475137 (-) True CI01000306_01469486_01475137
CI01000306_01476783_01478195.mRNA mRNA upstream 164230 1476664 ~ 1478195 (-) True CI01000306_01476783_01478195
CI01000306_01483485_01492511.mRNA mRNA upstream 170438 1482872 ~ 1492511 (-) True CI01000306_01483485_01492511
CI01000306_01502721_01504240.mRNA mRNA upstream 190232 1502666 ~ 1504240 (-) True CI01000306_01502721_01504240
TU495679 other downstream 148364 1163027 ~ 1163338 (-) True G431706
TU495332 other downstream 828053 448704 ~ 483649 (-) False G431428
TU495726 other upstream 405499 1747526 ~ 1748222 (-) False G431728
TU495727 other upstream 405499 1748822 ~ 1748950 (-) True G431728
TU496065 other upstream 1687802 3000236 ~ 3003891 (-) True G432022
TU497393 other upstream 3230289 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU497685 other upstream 4049209 5361643 ~ 5383763 (-) True G433450

Expression Profile