RNA id: TU502288


Basic Information

Item Value
RNA id TU502288
length 345
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G437620
representative True

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 111828 ~ 112172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATAGATAGATAGATAGATAGATAGATAGATAGATAGAGAAGTGAGTTACAATGTTGCCATTTTTCAGAAACATTTGGTCACTGAATGTTGTCATTTTACGAATCAAGTATTCCAAAAAGCCATGGAAATGAACTTAATATTATTTAAATGTAAAGTGCTCTTGATTATTTCAAACTTAGGGCCTATATAAATTTGATTTTCTCTCACAGTGACAAGAAAAACATGCTGAAAAAACATAAACAGTACCGTTCTCAACCAAGCGGTGTTCTATAGGCCATGGGAAACTGTCTGTCGGGGCAGTTATCGCGACAGGTTACTGTAAATTAATCACACTACTCTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU502262 lncRNA downstream 62366 49234 ~ 49462 (-) True G437594
TU502261 lncRNA downstream 62847 48733 ~ 48981 (-) True G437593
TU502290 lncRNA upstream 2153 114325 ~ 114628 (-) True G437622
TU502293 lncRNA upstream 7779 119951 ~ 120204 (-) True G437625
TU502295 lncRNA upstream 11847 124019 ~ 125151 (-) True G437627
TU502297 lncRNA upstream 15255 127427 ~ 127921 (-) True G437629
TU502301 lncRNA upstream 19412 131584 ~ 131901 (-) True G437633
CI01000308_00110535_00111604.mRNA mRNA downstream 170 109601 ~ 111658 (-) True CI01000308_00110535_00111604
CI01000308_00041387_00048067.mRNA mRNA downstream 63575 41347 ~ 48253 (-) True CI01000308_00041387_00048067
CI01000308_00012346_00036304.mRNA mRNA downstream 75415 11975 ~ 36413 (-) True CI01000308_00012346_00036304
CI01000308_00003475_00004723.mRNA mRNA downstream 107001 3297 ~ 4827 (-) True CI01000308_00003475_00004723
CI01000308_00474123_00482394.mRNA mRNA upstream 361892 474064 ~ 483464 (-) True CI01000308_00474123_00482394
CI01000308_00529728_00530015.mRNA mRNA upstream 417446 529618 ~ 530145 (-) True CI01000308_00529728_00530015
CI01000308_00711286_00720426.mRNA mRNA upstream 599044 711216 ~ 720712 (-) True CI01000308_00711286_00720426
CI01000308_00750618_00755764.mRNA mRNA upstream 637615 749787 ~ 756480 (-) True CI01000308_00750618_00755764
CI01000308_01027964_01028971.mRNA mRNA upstream 913673 1025845 ~ 1028971 (-) True CI01000308_01027964_01028971
TU502303 other upstream 23136 135308 ~ 135685 (-) True G437635
TU503204 other upstream 835384 947556 ~ 953628 (-) False G438434
TU503464 other upstream 1665423 1777595 ~ 1782581 (-) True G438671

Expression Profile