RNA id: TCONS_00002908


Basic Information

Item Value
RNA id TCONS_00002908
length 439
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_000984
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7908282 ~ 7920702 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGTGACTAAATTTAAGTTTGTCCATCGACTTAATGTAGAACTGTATGTCTTTTCCATTTAATATACTTGTAgctgatgtttgtttgtttccacTTTCCAGCAGTTCTCATTGATAAAAGTGCAGAATTTCTTGAAGGATTTGCTCCATTGTCATTTGTACTTGTTCAACGCTTGCTTATGCATGTCACAAATCAAATTGAACACGAGTTGATGCAGTTTTCATGGATTAATCTGAAGTTCCCAACTGGAAAGTGTTTTGCAAGAGATGTGGGAAGACCAAAAAGTCAGTCTGGAGGTCTGCAGTTTGGAATATGAAGTCCTGTTTTTCCACAAATGCCAATGttggaaaatatttattcatttttaaccaCATGTTGTTTGAGTTGATGCTTGTTAATAGAAGCTGTTGCCAAATATGCATCGTATTTCTATAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001555 lncRNA downstream 73513 7771557 ~ 7844362 (-) True XLOC_000981
TCONS_00001554 lncRNA downstream 216019 7700023 ~ 7701856 (-) True XLOC_000980
TCONS_00001553 lncRNA downstream 249320 7662638 ~ 7668555 (-) True XLOC_000979
TCONS_00002907 lncRNA downstream 258118 7659201 ~ 7659757 (-) True XLOC_000978
TCONS_00001551 lncRNA downstream 280195 7634813 ~ 7637680 (-) False XLOC_000978
TCONS_00002916 lncRNA upstream 167 7919319 ~ 7920694 (-) False XLOC_000984
TCONS_00003331 lncRNA upstream 283238 8202390 ~ 8205228 (-) True XLOC_000996
TCONS_00003332 lncRNA upstream 585825 8504977 ~ 8507689 (-) False XLOC_000998
TCONS_00001581 lncRNA upstream 587270 8506422 ~ 8510066 (-) True XLOC_000998
TCONS_00001583 lncRNA upstream 624000 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001561 mRNA downstream 813 7908282 ~ 7917062 (-) False XLOC_000984
TCONS_00001560 mRNA downstream 4943 7908282 ~ 7912932 (-) False XLOC_000984
TCONS_00001557 mRNA downstream 23620 7847787 ~ 7894255 (-) False XLOC_000983
TCONS_00001559 mRNA downstream 23620 7889110 ~ 7894255 (-) True XLOC_000983
TCONS_00001558 mRNA downstream 24067 7847820 ~ 7893808 (-) False XLOC_000983
TCONS_00001565 mRNA upstream 5804 7924956 ~ 7930679 (-) True XLOC_000986
TCONS_00001566 mRNA upstream 17118 7936270 ~ 7939514 (-) True XLOC_000987
TCONS_00001567 mRNA upstream 27690 7946842 ~ 7951002 (-) True XLOC_000988
TCONS_00001568 mRNA upstream 45124 7964276 ~ 7970653 (-) False XLOC_000989
TCONS_00001569 mRNA upstream 48940 7968092 ~ 7975755 (-) False XLOC_000989
TCONS_00001556 other downstream 116229 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001549 other downstream 267803 7632119 ~ 7650072 (-) False XLOC_000978
TCONS_00001545 other downstream 314302 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001543 other downstream 775732 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001542 other downstream 1464356 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001563 other upstream 328 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001564 other upstream 967 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001570 other upstream 51254 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001587 other upstream 633598 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001595 other upstream 730957 8650109 ~ 8652655 (-) False XLOC_001004

Expression Profile

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