RNA id: TCONS_00001563



Basic Information


Item Value
RNA id TCONS_00001563
length 88
RNA type snoRNA
GC content 0.41
exon number 1
gene id XLOC_000984
representative True

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7908282 ~ 7920702 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGCCGCTGATGACTTCAGTTTACTTTTTCTGACACCTCGTATGAACGCTGTAATTCAGCAACTGATTATTAAGTTTAGTCTGAGGCTC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000130915

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00002908 lncRNA downstream 328 7917875 ~ 7919152 (-) False XLOC_000984
TCONS_00001555 lncRNA downstream 75118 7771557 ~ 7844362 (-) True XLOC_000981
TCONS_00001554 lncRNA downstream 217624 7700023 ~ 7701856 (-) True XLOC_000980
TCONS_00001553 lncRNA downstream 250925 7662638 ~ 7668555 (-) True XLOC_000979
TCONS_00002907 lncRNA downstream 259723 7659201 ~ 7659757 (-) True XLOC_000978
TCONS_00003331 lncRNA upstream 282823 8202390 ~ 8205228 (-) True XLOC_000996
TCONS_00003332 lncRNA upstream 585410 8504977 ~ 8507689 (-) False XLOC_000998
TCONS_00001581 lncRNA upstream 586855 8506422 ~ 8510066 (-) True XLOC_000998
TCONS_00001583 lncRNA upstream 623585 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001584 lncRNA upstream 624120 8543687 ~ 8545359 (-) False XLOC_000999
TCONS_00001561 mRNA downstream 2418 7908282 ~ 7917062 (-) False XLOC_000984
TCONS_00001560 mRNA downstream 6548 7908282 ~ 7912932 (-) False XLOC_000984
TCONS_00001557 mRNA downstream 25225 7847787 ~ 7894255 (-) False XLOC_000983
TCONS_00001565 mRNA upstream 5389 7924956 ~ 7930679 (-) True XLOC_000986
TCONS_00001566 mRNA upstream 16703 7936270 ~ 7939514 (-) True XLOC_000987
TCONS_00001567 mRNA upstream 27275 7946842 ~ 7951002 (-) True XLOC_000988
TCONS_00001568 mRNA upstream 44709 7964276 ~ 7970653 (-) False XLOC_000989
TCONS_00001569 mRNA upstream 48525 7968092 ~ 7975755 (-) False XLOC_000989
TCONS_00001562 other downstream 598 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001556 other downstream 117834 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001549 other downstream 269408 7632119 ~ 7650072 (-) False XLOC_000978
TCONS_00001545 other downstream 315907 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001543 other downstream 777337 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001564 other upstream 552 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001570 other upstream 50839 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001587 other upstream 633183 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001595 other upstream 730542 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 1198533 9118100 ~ 9118671 (-) False XLOC_001012