RNA id: TCONS_00001564



Basic Information


Item Value
RNA id TCONS_00001564
length 88
RNA type snoRNA
GC content 0.40
exon number 1
gene id XLOC_000985
representative True

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7920119 ~ 7920206 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGCCGATGATGACTTCAATTTACTTTTTCTGACACCTCGTATGAACGCTGTTATTCAGCAGCTGATTATAAACTTAAGTCTGAGGCTC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000180877

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00002908 lncRNA downstream 967 7917875 ~ 7919152 (-) False XLOC_000984
TCONS_00001555 lncRNA downstream 75757 7771557 ~ 7844362 (-) True XLOC_000981
TCONS_00001554 lncRNA downstream 218263 7700023 ~ 7701856 (-) True XLOC_000980
TCONS_00001553 lncRNA downstream 251564 7662638 ~ 7668555 (-) True XLOC_000979
TCONS_00002907 lncRNA downstream 260362 7659201 ~ 7659757 (-) True XLOC_000978
TCONS_00003331 lncRNA upstream 282184 8202390 ~ 8205228 (-) True XLOC_000996
TCONS_00003332 lncRNA upstream 584771 8504977 ~ 8507689 (-) False XLOC_000998
TCONS_00001581 lncRNA upstream 586216 8506422 ~ 8510066 (-) True XLOC_000998
TCONS_00001583 lncRNA upstream 622946 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001584 lncRNA upstream 623481 8543687 ~ 8545359 (-) False XLOC_000999
TCONS_00001561 mRNA downstream 3057 7908282 ~ 7917062 (-) False XLOC_000984
TCONS_00001560 mRNA downstream 7187 7908282 ~ 7912932 (-) False XLOC_000984
TCONS_00001557 mRNA downstream 25864 7847787 ~ 7894255 (-) False XLOC_000983
TCONS_00001565 mRNA upstream 4750 7924956 ~ 7930679 (-) True XLOC_000986
TCONS_00001566 mRNA upstream 16064 7936270 ~ 7939514 (-) True XLOC_000987
TCONS_00001567 mRNA upstream 26636 7946842 ~ 7951002 (-) True XLOC_000988
TCONS_00001568 mRNA upstream 44070 7964276 ~ 7970653 (-) False XLOC_000989
TCONS_00001569 mRNA upstream 47886 7968092 ~ 7975755 (-) False XLOC_000989
TCONS_00001563 other downstream 552 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001562 other downstream 1237 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001556 other downstream 118473 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001549 other downstream 270047 7632119 ~ 7650072 (-) False XLOC_000978
TCONS_00001545 other downstream 316546 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001570 other upstream 50200 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001587 other upstream 632544 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001595 other upstream 729903 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 1197894 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 1277653 9197859 ~ 9197966 (-) True XLOC_001018