RNA id: TCONS_00001570


Basic Information

Item Value
RNA id TCONS_00001570
length 509
RNA type processed_transcript
GC content 0.39
exon number 7
gene id XLOC_000989
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7964276 ~ 7975769 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTATTTGATCATATTTAGGTGGggggaaaaagagaaaaaatgggACCACCACaatcaaaatatgaaaaaaagcatCTGCAGCCAAGTGGTCAGatGGGTAACAAAAGAGATGGGAGTCAATCACAGACTGGTGATCGACGACATACAAAAGACCATGTTGATATTAAAACTGAATCACAAAGAAAACCAAAAAAAGcaatgtcAACATGCAGCTATGATTCTGGATATGCTGTGTCAACAAATGAGCCACTATATGATGAGAGTAATCTTGATGAAAGACGTACACAAAGCAGTTCTTCCTGGGAACGCCCTAACCTAGTATATCGACAGGATTTGGATATGTCTACACTCAGATATGCTGTGTCAGCAAATGAGCCACTATATGATGAGAGTAGTCTTGATGAGAGACGAACACAAAGCAGTTCTTCCAGGGAACGTCCTGACCTAGTATATCAACAGGATTTGGATATGTCTACACTCAGGTACAAATTAATGTGATGTTAAAAGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000144582

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002909 lncRNA downstream 49704 7915480 ~ 7920702 (-) False XLOC_000984
TCONS_00003330 lncRNA downstream 49706 7915480 ~ 7920700 (-) False XLOC_000984
TCONS_00003329 lncRNA downstream 49706 7915480 ~ 7920700 (-) False XLOC_000984
TCONS_00003328 lncRNA downstream 49706 7915480 ~ 7920700 (-) False XLOC_000984
TCONS_00002912 lncRNA downstream 49706 7915480 ~ 7920700 (-) False XLOC_000984
TCONS_00003331 lncRNA upstream 226621 8202390 ~ 8205228 (-) True XLOC_000996
TCONS_00003332 lncRNA upstream 529208 8504977 ~ 8507689 (-) False XLOC_000998
TCONS_00001581 lncRNA upstream 530653 8506422 ~ 8510066 (-) True XLOC_000998
TCONS_00001583 lncRNA upstream 567383 8543152 ~ 8543611 (-) False XLOC_000999
TCONS_00001584 lncRNA upstream 567918 8543687 ~ 8545359 (-) False XLOC_000999
TCONS_00001567 mRNA downstream 19404 7946842 ~ 7951002 (-) True XLOC_000988
TCONS_00001566 mRNA downstream 30892 7936270 ~ 7939514 (-) True XLOC_000987
TCONS_00001565 mRNA downstream 39727 7924956 ~ 7930679 (-) True XLOC_000986
TCONS_00001561 mRNA downstream 53344 7908282 ~ 7917062 (-) False XLOC_000984
TCONS_00001560 mRNA downstream 57474 7908282 ~ 7912932 (-) False XLOC_000984
TCONS_00001571 mRNA upstream 17863 7993632 ~ 7998493 (-) False XLOC_000990
TCONS_00001572 mRNA upstream 18343 7994112 ~ 8000428 (-) True XLOC_000990
TCONS_00001573 mRNA upstream 25666 8001435 ~ 8012476 (-) True XLOC_000991
TCONS_00001574 mRNA upstream 41300 8017069 ~ 8020589 (-) True XLOC_000992
TCONS_00001575 mRNA upstream 46551 8022320 ~ 8101495 (-) True XLOC_000993
TCONS_00001564 other downstream 50200 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 50839 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001562 other downstream 51524 7918795 ~ 7918882 (-) False XLOC_000984
TCONS_00001556 other downstream 168760 7801531 ~ 7801646 (-) True XLOC_000982
TCONS_00001549 other downstream 320334 7632119 ~ 7650072 (-) False XLOC_000978
TCONS_00001587 other upstream 576981 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001595 other upstream 674340 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001610 other upstream 1142331 9118100 ~ 9118671 (-) False XLOC_001012
TCONS_00001617 other upstream 1222090 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 1484241 9460010 ~ 9486080 (-) False XLOC_001025

Expression Profile

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