RNA id: TCONS_00001610


Basic Information

Item Value
RNA id TCONS_00001610
length 479
RNA type processed_transcript
GC content 0.34
exon number 2
gene id XLOC_001012
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9118100 ~ 9123465 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATACATGATgtgcaacatttattttttttctctttctcttaaaCGCTTCTTCTGTTTAAAGATTATGAATGTGCAATCTAATAGTATGTGTATTTACCCAGATGATACATTGTGTGCTTTCATGTCCAGGTTTTGAGATCCCTGATGAGGATGCAGAAAAGTTGATGACCCCAGAACAGGTTGTACAGTACATCGCAGAAAAGAAGGAAGTTCATGAATGAGCATGACCTTTCATTATCAAGACAATCCCATCAGATGAAAAAGATCATGGAGACTCTGTCGTGAACTTTTTCTGctgttctttatttgttttgtatttcaaTACATGTTTAAATctgtgttcattattttgttgGTGGCCACTTGTCATTTTCTGGTTTGCAGTATTCTTCTGCTAGAGACATGCACAAAGAGCGTGCAAATATTGTGAATAATTCTTATGAATGCtgcaaaataaaaactttaaatcaGTTTAAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000035 acyl binding molecular_function
GO:0000036 acyl carrier activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-1 Predicted to enable acyl binding activity and acyl carrier activity. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be part of mitochondrial respiratory chain complex I. Predicted to be active in mitochondrion. Orthologous to human NDUFAB1 (NADH:ubiquinone oxidoreductase subunit AB1).

Ensembl:

ensembl_id ENSDART00000139516

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003338 lncRNA downstream 35328 9081842 ~ 9082772 (-) True XLOC_001010
TCONS_00003337 lncRNA downstream 137429 8978905 ~ 8980671 (-) False XLOC_001009
TCONS_00001604 lncRNA downstream 140137 8974500 ~ 8977963 (-) True XLOC_001008
TCONS_00003336 lncRNA downstream 140140 8974500 ~ 8977960 (-) False XLOC_001008
TCONS_00001597 lncRNA downstream 465452 8650109 ~ 8652648 (-) False XLOC_001004
TCONS_00003339 lncRNA upstream 19967 9138638 ~ 9139160 (-) True XLOC_001015
TCONS_00001614 lncRNA upstream 38639 9157310 ~ 9162637 (-) True XLOC_001016
TCONS_00001626 lncRNA upstream 189600 9308271 ~ 9314795 (-) False XLOC_001023
TCONS_00001627 lncRNA upstream 195837 9314508 ~ 9321931 (-) True XLOC_001023
TCONS_00003340 lncRNA upstream 302153 9420824 ~ 9422275 (-) True XLOC_001024
TCONS_00001609 mRNA downstream 3066 9113630 ~ 9115034 (-) True XLOC_001011
TCONS_00001607 mRNA downstream 3164 9100473 ~ 9114936 (-) False XLOC_001011
TCONS_00001608 mRNA downstream 8401 9105039 ~ 9109699 (-) False XLOC_001011
TCONS_00001606 mRNA downstream 13469 9100447 ~ 9104631 (-) False XLOC_001011
TCONS_00001605 mRNA downstream 137435 8978908 ~ 8980665 (-) True XLOC_001009
TCONS_00001612 mRNA upstream 6352 9125023 ~ 9130136 (-) True XLOC_001013
TCONS_00001613 mRNA upstream 13664 9132335 ~ 9134045 (-) True XLOC_001014
TCONS_00001615 mRNA upstream 51136 9169807 ~ 9195629 (-) False XLOC_001017
TCONS_00001616 mRNA upstream 51136 9169807 ~ 9195760 (-) True XLOC_001017
TCONS_00001618 mRNA upstream 108410 9227081 ~ 9228007 (-) False XLOC_001019
TCONS_00001595 other downstream 465445 8650109 ~ 8652655 (-) False XLOC_001004
TCONS_00001587 other downstream 564802 8552750 ~ 8553298 (-) True XLOC_000999
TCONS_00001570 other downstream 1142331 7970406 ~ 7975769 (-) True XLOC_000989
TCONS_00001564 other downstream 1197894 7920119 ~ 7920206 (-) True XLOC_000985
TCONS_00001563 other downstream 1198533 7919480 ~ 7919567 (-) True XLOC_000984
TCONS_00001617 other upstream 79188 9197859 ~ 9197966 (-) True XLOC_001018
TCONS_00001629 other upstream 341339 9460010 ~ 9486080 (-) False XLOC_001025
TCONS_00001646 other upstream 622131 9740802 ~ 9816875 (-) True XLOC_001029
TCONS_00001656 other upstream 944830 10063501 ~ 10064568 (-) False XLOC_001036
TCONS_00001657 other upstream 945203 10063874 ~ 10068533 (-) False XLOC_001036

Expression Profile

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